Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1419 ATGAAGAAAAAGGTGATGGGTAAGAAGAGACAATGGGTTTCCTTCTTCTGGTGGTTTGGAATGACTCTGCAGCTGTGTTTCTTGCTCGGTGCCTGTTCTGAGAAGACTTCATTTAGAAGAAGTTTAAGGGAGATCAAGAGTCCAGAACCAACATCTCATGCTGCTGTCACGCTGGATGCAGAAAACCATGAGCAGTTGGTGGTTGACAACGGAATTGTTTCCGTCACTTTGTCAAGACCTGAGGGCTATGTCCTTGGAATATCGTATAACGGAATTGACAATATACTTGAAACTGGAAACGAAGATCAAGATAGAGGGTACTTGGACGTCGTTTGGAATGAACCAGGGAAACCTAGTACTTTTCAGAGAATCCACGGGACAAATTTTTCGGTTATAGCAGCCGACGAGAATCTGGTGGAAGTTTCATTTTTAAGAACATGGACATCTTCTATGAATGGCTCAAGTGTCTCCATAAACATAGATATAAGATACATTTTGCGAAGTGGCGATTCAGGATTTTATTCATATGCAATATTTGATCGCCCTGAAGGATTGCCCGCGGTGGAGGTTGATCAAATCAGGATTGTTTTCAAACTCAGTAATGACAGGTTCCAGTATATGGCTATATCAGATGAGAGGCAAAGAAGCATGCCAACGATGAGAGATAGAGAAACAGGTGAAATCCTGGCTTACCCTGAAGCAGTACTATTAACAAGACCAATGAACGCAGAATTCAGGGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACACGGACAACACAGTTCATGGATGGATGAGTCTTGACTCTGATGCACCCGTGGGTTTCTGGATGATAACACCCAGTAACGAGTTCCGCAATGCAGGGCCCATCAAGCAAGACCTCACTTCCCATGTTGGCCCCATCACCCTCTCTATGTTTGTGAGTACCCACTATGCTGGCAAGGAGGTGACCATGGCATTTCAAGAAGGGGAGACTTATAAAAAGGTTTTTGGACCTGTATTTGTCTACGTTAACTCTGCTTCAAGCGAGAATGATACACTATCCCTCTGGTCAGATGCTGTGCAGCAGCAATCCAAGGAAGTCAAAAGCTGGCCTTACGATTTTCCTAGATCCGAAGATTTCCTTCCACCTAATCAAAGGGGAACAGTACAGGGAAGGTTACTTGTCCAAGATCGGTACATCAAAGGTGGGAGATTTCAATATGCTAACGACGCTTATGTCGGGCTTGCTTTGCCTGGAGAAGCTGGATCATGGCAGAAAGAAAGCAAGGGCTACCAATTCTGGACTCAAGCCGATACAGAAGGATACTTCGTCATAAACAATGTTGTGCCTGGTGAATATAATTTGTATGCATGGTTTCCAGGCTTCATTGGTGATTATAGATATAATGGGACAATCAGCATGTCACCAGGAGGAATCATGAAATTGGATTCACTTGTATATAGTCCTCCAAGAAATGGAGCAACTATTTGGGAAATTGGGGTCCCAGATCGCTCGGCTGCAGAATTCTACGTACCAGACCCCTACCCTACGCTTATGAACAAATTATACAACGAGCAGCGCAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTACGCTGATTTATATCCAAATGATGATCTTATTTACACTGTCGGTGTTAACAACTATCATAAGGATTGGTTTTTTGCTCATGTTACGAGAAACACAGGAAATAAGACATACCAGCCAACAACATGGCAGATTATATTTGTTCATCGAAATGAAATAATAAGTGGAAACTACACACTACAACTGGCCTTGGCATGTGCAGCTGATGCTGACCTGCAGGTTCGATTCAATGACCCTGGCGCTTATCCACCCCACTTTGCAACAGGGCGCATAGGAGGAGATAATGCCATAGCAAGACATGGCATCCATGGATTGCATAGGTTGTTCAGCATTGATGTACCGAGTAACCTTTTTGTGAAAGGAAAGAACACTATCTATCTGAGGCAATCAAGAGCCATAAATCCTTTCCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCTCCAATTCCAACCACTTGA 2070 0.4348 MKKKVMGKKRQWVSFFWWFGMTLQLCFLLGACSEKTSFRRSLREIKSPEPTSHAAVTLDAENHEQLVVDNGIVSVTLSRPEGYVLGISYNGIDNILETGNEDQDRGYLDVVWNEPGKPSTFQRIHGTNFSVIAADENLVEVSFLRTWTSSMNGSSVSINIDIRYILRSGDSGFYSYAIFDRPEGLPAVEVDQIRIVFKLSNDRFQYMAISDERQRSMPTMRDRETGEILAYPEAVLLTRPMNAEFRGEVDDKYQYSCENTDNTVHGWMSLDSDAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYVNSASSENDTLSLWSDAVQQQSKEVKSWPYDFPRSEDFLPPNQRGTVQGRLLVQDRYIKGGRFQYANDAYVGLALPGEAGSWQKESKGYQFWTQADTEGYFVINNVVPGEYNLYAWFPGFIGDYRYNGTISMSPGGIMKLDSLVYSPPRNGATIWEIGVPDRSAAEFYVPDPYPTLMNKLYNEQRRDKFRQYGLWERYADLYPNDDLIYTVGVNNYHKDWFFAHVTRNTGNKTYQPTTWQIIFVHRNEIISGNYTLQLALACAADADLQVRFNDPGAYPPHFATGRIGGDNAIARHGIHGLHRLFSIDVPSNLFVKGKNTIYLRQSRAINPFQGVMYDYIRLERPPIPTT* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1419 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 685 - -
Apr8g1419 689 CDD RGL4_C 494 682 - -
Apr8g1419 689 Pfam Polysaccharide lyase family 4, domain III 492 681 IPR029411 -
Apr8g1419 689 Gene3D - 489 682 - -
Apr8g1419 689 Gene3D - 56 357 IPR014718 GO:0030246
Apr8g1419 689 CDD RGL4_M 382 482 IPR029413 -
Apr8g1419 689 SUPERFAMILY Galactose-binding domain-like 489 682 IPR008979 -
Apr8g1419 689 SUPERFAMILY Starch-binding domain-like 378 479 IPR013784 GO:0030246
Apr8g1419 689 CDD RGL4_N 65 349 - -
Apr8g1419 689 SUPERFAMILY Galactose mutarotase-like 61 347 IPR011013 GO:0003824|GO:0005975|GO:0030246
Apr8g1419 689 Gene3D - 378 474 - -
Apr8g1419 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 685 - -
Apr8g1419 689 Pfam Polysaccharide lyase family 4, domain II 407 475 IPR029413 -
Apr8g1419 689 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Apr8g1419 689 Pfam Rhamnogalacturonate lyase family 51 249 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1419 Apr-Chr8 22617657 22625079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1419 59 684 Polysaccharide Lyase AT1G09890 55.644 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1419 K18195 - gmx:100776664 1170.99