Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1418 ATGCTGAATTTAAGGGAGATCAGCAGTCCTAAATCATCTAATCAACCTGAAGTCAAACTGCATGAAGAAAACAAGCAGGTATTTAAAATGTTTTTGGTGATACTGGAAAATGGCATCATTCGTATGACTTTGTCAAAACCGGAGGGCACTGTTCTTGGAATATCATATAATGGAATTGATAACGTGCTTGAAGGTCGCAACAAATATAACAACAGAGGGTATTTTGACGTTGTCTGGAATATACCAGGAAATACATCGAAACTTTCGGGAATGCATGGGACTAGATTTTCTGTTATAGAGGCCAGCGAGAATCAAGTAGAGGTTTCATTTTCAAGAACGTGGGATATGGACGGCTCGAGCCCCCCCTTAAACATAGACAAAAGATATATTTTACGTAGAGGTACTTCAGGATTATACATATATGGTATATTTGAGCGTCCTGAAGGTTTTCCTGCTGTCGAGATTGACCACATTAGGGTCGTTTTTAAGCTACAAAAGGACAGGTTTCACTATATGGCTATAGCAGATGATAGGCAGCGAGTCATGCCAACGCCAGAAGATAGATCCGTAGGGCAACGCCTTGATTTTGATGAAGCTGTTCTAATAACCAATTCTGATGACCCAGGGCTTCGAGGAGAGGTGGATGACAAGTATCAATACTCTTGTGAGAATAAAGATAACAAACTTCATGGATGGATTAACTTTGACTCCAAGTCCGACAAGTCAGTGGGGTTTTGGATGATAACACCAAGTAATGAGTTCCGTAGTGGTGGGCCAATCAAGCAAGGTCTCACTTCTCATGTAGGACCTGCCACCCTCAATATACTTCACACTACCCACTACTCCGGGAAGGAGGTAACTATGGCATTTCAAGAAGGGGAAACTTTCAAGAAAGTTTATGGCCCAGTTTTTGTCTATCTCAACTCGGTTACAAGGGACCATGATTCACAAGCTCTCTGGGCTAATGCTGTACAACAGTTGTCTGAGGAAATCAAAAGTTGGCCATATGATTTCCCTAAATCAGATGCTTTTTTCCCACCCAACAAACGGGGAAGAGTGGAAGGACAGTTACTAGTCCAAGACCGACACAATAACGGGGGGAGATCTGTATATGGAGAAAATGCTTATGTTGGTTTGGCTCTGCCAGGTGATGTGGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTGAAGCTGACAAAGTGGGTCATTTCACAATTGAAAATGTAGTACCGGGGGACTACAATTTATATGCATGGGTTCCTGGCGTTTTTGGGAATTATAAATATAAAACTACTATAACCATCACACCAGGATGTTTTATCCAATTGGGTTCATTAATATACAATCCTCCAAGAAATGGACCTACCATATGGGAAATTGGCATCCCAGACCGCTCTGCTGCCGAGTTCTATGTTCCGGACCCTTATCCTAACCTCATGAACCGATTATACATTGGGAAACCAAAAGACAAGTTTAGACAATATGGATTATGGCAGCGTTACACTGAATTATATCCAACTCAGAACCTTGTTTATAATGTTGGTGTTAGTGATTATAGTAAAGATTGGTTTTATGCTCAAGTTCCGAGGAACATAGGAAATAACACATTTCGCCCAACAACATGGGAGATTAGATTTCATCTCCCATCTGTTATAAGAGGAACCTACACCCTACAACTTGCCTTGGCCTCTGCTACAAGGTCTAACTTACAGGTTCGGTTCAATAACCCTCTGGCACGTCCTCCACATTTCTCCACGGGATTAATAGGCCAAGACAATGCTGTAGCAAGACATGGCATCCATGGATTGTACTGGCCATATAGCATTGAACTAGCAAGCCATCTATTGGTAGAAGGAAGCAACACCATCTATCTGAGGCAGGCCCAAGCTCTAAGTCCTTTTCAAGGAGTTATGTATGATTACATCCGTTTGGAAAGACCTCGAACTTGA 1959 0.4201 MLNLREISSPKSSNQPEVKLHEENKQVFKMFLVILENGIIRMTLSKPEGTVLGISYNGIDNVLEGRNKYNNRGYFDVVWNIPGNTSKLSGMHGTRFSVIEASENQVEVSFSRTWDMDGSSPPLNIDKRYILRRGTSGLYIYGIFERPEGFPAVEIDHIRVVFKLQKDRFHYMAIADDRQRVMPTPEDRSVGQRLDFDEAVLITNSDDPGLRGEVDDKYQYSCENKDNKLHGWINFDSKSDKSVGFWMITPSNEFRSGGPIKQGLTSHVGPATLNILHTTHYSGKEVTMAFQEGETFKKVYGPVFVYLNSVTRDHDSQALWANAVQQLSEEIKSWPYDFPKSDAFFPPNKRGRVEGQLLVQDRHNNGGRSVYGENAYVGLALPGDVGSWQRQSKGYQFWTEADKVGHFTIENVVPGDYNLYAWVPGVFGNYKYKTTITITPGCFIQLGSLIYNPPRNGPTIWEIGIPDRSAAEFYVPDPYPNLMNRLYIGKPKDKFRQYGLWQRYTELYPTQNLVYNVGVSDYSKDWFYAQVPRNIGNNTFRPTTWEIRFHLPSVIRGTYTLQLALASATRSNLQVRFNNPLARPPHFSTGLIGQDNAVARHGIHGLYWPYSIELASHLLVEGSNTIYLRQAQALSPFQGVMYDYIRLERPRT* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1418 652 CDD RGL4_M 349 449 IPR029413 -
Apr8g1418 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 29 651 - -
Apr8g1418 652 Pfam Rhamnogalacturonate lyase family 12 214 IPR010325 -
Apr8g1418 652 CDD RGL4_N 33 316 - -
Apr8g1418 652 CDD RGL4_C 461 648 - -
Apr8g1418 652 SUPERFAMILY Galactose mutarotase-like 40 309 IPR011013 GO:0003824|GO:0005975|GO:0030246
Apr8g1418 652 Gene3D - 346 442 - -
Apr8g1418 652 Gene3D - 456 648 - -
Apr8g1418 652 Gene3D - 12 324 IPR014718 GO:0030246
Apr8g1418 652 Pfam Polysaccharide lyase family 4, domain II 373 444 IPR029413 -
Apr8g1418 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 29 651 - -
Apr8g1418 652 SUPERFAMILY Starch-binding domain-like 345 446 IPR013784 GO:0030246
Apr8g1418 652 SUPERFAMILY Galactose-binding domain-like 456 648 IPR008979 -
Apr8g1418 652 Pfam Polysaccharide lyase family 4, domain III 459 647 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1418 Apr-Chr8 22607376 22611904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1418 33 650 Polysaccharide Lyase AT1G09910 54.735 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1418 K18195 - gmx:100792575 1112.83