LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g1415	ATGAAGATGAAGGTCCCAAATTTTATTGGGGGTAAATTTGTTGATTCTCAAGGTTCTGTAATCGTTGATGTTTTAAATCCTGCAACACAAGAAGTTGTATCTCAAGTTCCTTTACCTACATATGAAGAGTTTAAAGCTGCGGTTAGTGCAGCCAAGCAAGCTTTTCCTTCATGGAAAAACACACCTATCACGACTCGTCAACGTATTATGTTTAAATTTCTGGAGCATATCCGCAGAGATATTGATAAGCTTGCCATGAATATCACCGTAGAACAGGGAAAGACATTAAAAGGTGCCCAAGGAGACGTGCTTCGTGGTTTAGACGTGGTGGAGCATACTTGTGGGATGGCAAACCTGCAGATTGGAGAATTTGTCCCTAATGTCTGTAATGGGATTGATACATACTGCATCAGAGAGCCCCTTGGAGTTTGTGCTGGAATATGCCCCTTTAACTCTTCAGCAATGATACCATTGTGGACGTTCCCTATTGCAATTACATGTGGCAACACTTTTGTTCTCAAGCCATGTGAGAAAAATCCAGGGGCTTCAATGATACTTGCAACACTAGCTAAGGAAGCTGGTTTGCCGGATGGTGTATTAAATATTATTCACGGTACCCATGATATTGTTAATTACATATGTGATGATGAAGATATAAAAGCTGTATCATTTGATGGTCCAATTACAGTAAGTTTGCACATATATGCCACGGCTGCTGCTAGAGGGAAACGTCTTCAGTCAAATGCAGGCGGCATAAATCATGTAGTTGTCATGTCTGATGCTAATTTGGATGCTACTCTAGATGCCCTTGTTCCTGCTGGCTTTGGTGCTGCAGGAGAGAGGTGCATGACTTTAAGTGCAGCAATTTTTGTTGGAGGTTCAATGCAATGGGAAGAAAAACTAGTGCAGCGTGCCAAATTGCTTAGAGTGAATGCAGGAACAGATCCTAGTGCAGACATTGGTCCAGTTATTAGCAAAGAGGCAAAGGAGAGGATATGTAGACTAGTTCAGACCAGTGTTGAAAATGGTGCTAGACTTCTACTTGATGGAAGAGACATTGTGGTACAAGGATATGAGAGGGGAAACTTTGTTGGTCCTACTATCTTATGTGATATTACAACCAGCATGGAGTGTTACAAGGAAGAAATATTTGGACCAGTTCTACTTTGCATGCAGGTTGAGAACCTAGATGAGGCTTTATCAATAATAAATAAAAGGAGAAATGGAAATGGAGCTTCTATATTCACCACATCTGGTATGGCTGCTAGGAGGTTCCAGAATGAGGTTGAGGCTGGACTGGTTGGGATCAATGTGCCAGTACCTTTGCCATTACCATTTTCCTCCAATGGGTCAAAAGCATTTGCTGGAGGTTTCAGTTTTTGTGGAAAAGCAGGAGTACAGTTTTATACCCAAATCAAAACAGTGGCACAACAATGGAAGGATATCCCTAGACGAGTAGTATTCCCTGTTGCATGCCCATCTGAGAGAGATTCACCGAGGCAAATGACACCGCGAGCCGTATCTATAGATTCTGAAAGTGATTCCCCATCCTATGAGGTACAAATGGCCATCCACGGCGCAGATATACCAAAGACAGCCTTGACATCTGCATCTCCATCAAATGATAAGGATTATAGAAGCCAGGATGTTTCCCTAGTTATTCCTTCAACATCTGAGAGGGATATGTCGGATCAGGACATGTCACTGGTACCATCACCTGCATTGCAAAGGGATTTACCTAGCCAAAGAGTATCCATAGCCACATCACAGGCATCAGAGAGGATGTATTTTTCTAAAACATCTCATTGGAATGAAAGTTCTCCAGGAACATCGCATAGGAGTGAGACTATTCTGCCAATTTCCGAGAAGAGTCATGCGTCTCTATCTCAGATAAATGGAAATATTTATACCCTGCAGAGGCCAGATGCTGCTGCAGCTTTGAAGCAAGAGGGGGGGAAATACATGTGTATGTCACGTAAAACTGATAACATAGCTCAAACATCACTAGGGAGTGATGTCAGTCCAGCGTCTCATAGGATGGATGCTACTGTGCATTCAAATTCTGACAAGGCATACATAATGGAAGCATCCCATTTGAATAAAAGTAATGGTCAAACATTTGAAAGAACAGACCCCATGTTTTCAAATTCTGAGAGATTACACAGGCCTTCAACATCTCAAAGAAATGACAAGATTGGTTCAACATCTGAAAGGACAGATATAGCCTTAACAACAGAGAGAATATATATCCCTGCAGCATCTCATAGAAATGAAAGCATTAGTCCTACATTTCAGCTTGATGATGTACAGAATATACCGGCAAGTTCAGAGATGTTATATATTCCTTCAAATTCTCAAAGAATGTATAATCAAAACCCAATAATTTCAATGGATGAATATCCCAGCCAAGCTTTACCGTCATCTCAGAGGATATAA	2436	0.4134	MKMKVPNFIGGKFVDSQGSVIVDVLNPATQEVVSQVPLPTYEEFKAAVSAAKQAFPSWKNTPITTRQRIMFKFLEHIRRDIDKLAMNITVEQGKTLKGAQGDVLRGLDVVEHTCGMANLQIGEFVPNVCNGIDTYCIREPLGVCAGICPFNSSAMIPLWTFPIAITCGNTFVLKPCEKNPGASMILATLAKEAGLPDGVLNIIHGTHDIVNYICDDEDIKAVSFDGPITVSLHIYATAAARGKRLQSNAGGINHVVVMSDANLDATLDALVPAGFGAAGERCMTLSAAIFVGGSMQWEEKLVQRAKLLRVNAGTDPSADIGPVISKEAKERICRLVQTSVENGARLLLDGRDIVVQGYERGNFVGPTILCDITTSMECYKEEIFGPVLLCMQVENLDEALSIINKRRNGNGASIFTTSGMAARRFQNEVEAGLVGINVPVPLPLPFSSNGSKAFAGGFSFCGKAGVQFYTQIKTVAQQWKDIPRRVVFPVACPSERDSPRQMTPRAVSIDSESDSPSYEVQMAIHGADIPKTALTSASPSNDKDYRSQDVSLVIPSTSERDMSDQDMSLVPSPALQRDLPSQRVSIATSQASERMYFSKTSHWNESSPGTSHRSETILPISEKSHASLSQINGNIYTLQRPDAAAALKQEGGKYMCMSRKTDNIAQTSLGSDVSPASHRMDATVHSNSDKAYIMEASHLNKSNGQTFERTDPMFSNSERLHRPSTSQRNDKIGSTSERTDIALTTERIYIPAASHRNESISPTFQLDDVQNIPASSEMLYIPSNSQRMYNQNPIISMDEYPSQALPSSQRI*	812

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g1415	811	SUPERFAMILY	ALDH-like	3	482	IPR016161	GO:0016491
	Apr8g1415	811	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	250	446	IPR016163	GO:0016620
	Apr8g1415	811	MobiDBLite	consensus disorder prediction	715	736	-	-
	Apr8g1415	811	CDD	ALDH_F6_MMSDH	5	479	IPR010061	GO:0004491
	Apr8g1415	811	MobiDBLite	consensus disorder prediction	494	515	-	-
	Apr8g1415	811	PANTHER	METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE	2	619	-	-
	Apr8g1415	811	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	9	249	IPR016162	GO:0016491
	Apr8g1415	811	Pfam	Aldehyde dehydrogenase family	13	475	IPR015590	GO:0016491
	Apr8g1415	811	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	2	619	IPR010061	GO:0004491
	Apr8g1415	811	TIGRFAM	MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)	6	479	IPR010061	GO:0004491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g1415	Apr-Chr8	22461931	22488768	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g1415	1	463	Aldehyde Dehydrogenase Gene Family	AT2G14170	70.538	0.0	685

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g1415	K00140		-	gmx:100796803	1188.71

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