Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1394 ATGTCAAACATCACAAGCTGTGATAGTGGAAGCTTCTCTACAGAGAATACCAGAGAAGATGCACTTAAACAGCAACAAGAGATGCTTGGCCAGTTCCATAGTCCACATTCTCATACTTCAACAACAACAACAAATAACAGCAATGGTTCCAACAATAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTTTATCACCAAACACACTCATGGCCACGAACAGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGGGGTCACAATTTACCATGGAAGCTTAAACAAAGAACCAGCACAGAAATTCGAAAGCGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAACCCTGCAAGAGCACTGGGTGATCTCACTGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCAAAGAAATATGCTGTTCAGTCTGACTGGAAAGCCCATTCAAAAATCTGTGGTACAAGGGAATACAAATGTGATTGTGGAACCATCTTTTCCAGAAGAGATAGCTTCATTTCGCACAGGGCTTTCTGTGATGCACTAGCTGAGGAGAACAACAAAGCCAATGAAGGACAATTGTCAAAGATAGGTTCAAACATGCAATGCCAACCAATACCAAACCTCGTTTCCTCATTACCACTCAACACCAATATTCCCAACCCACAAATTGGTGGCGCCTCGAAATTCAACCATTCTGATCACAAGCATCCACTTTCACTGCCACAAGAACTCATGCCAATGCCTTCAGCAAAACCCTTCAACAGCAACATGCCGGGGAACTTGTTCACAAGAAGCCTTTCATCCACCTCTTCTCCCTCTCTTCAACTAAGTTCAAACATGTTCGAGGAAAACGGGCTTCACTTAGCTGCAGGTTCGCCACACATGTCAGCCACTGCGTTGCTGCAAAAAGCTGCACAAATGGGTGCAACAGTGACGGAAAAAACCTTTGCAACAAACATGGCACCGCCATCATTTGGTGTGGTGCAACAACAACAACAACCAAATGGGCAATCCTTCATGAACCAGTACATGCACAATGGCCAACACGATATCAATATTTCTGCTCAGTATACTAATTTTGGTGCAAATGGAATGGGAGGAGGAGGTGTTGGAATGAATGGTGTGGATATGTTCAACGCAATATTGGATCAAAGCAAGGCTTTATCGAAGATCATAGAGCAAAACAGTAGAAGCAATAGTGGAGGACCAACAAACGGTGGGTCAAGTAGTGCCATTAACATTGGTGGAACCAAAGGAAGCGGAGATGTGACGACTCTTGACTTGTTGGGGATAGGAGGAGGAGGAGGAGGAGGTGCTGCTGCTGCACATGGAAATTTCTATGGTGGTACGCAACAAGCAGAAAGTGGTGCAGCAGATGAGGTTTGGAGAAATTGGTCGAGTAAGAATGCGGGCTTTGAATCATTTTCAGCAACAAGCAGCATTTGA 1554 0.4447 MSNITSCDSGSFSTENTREDALKQQQEMLGQFHSPHSHTSTTTTNNSNGSNNNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFISHRAFCDALAEENNKANEGQLSKIGSNMQCQPIPNLVSSLPLNTNIPNPQIGGASKFNHSDHKHPLSLPQELMPMPSAKPFNSNMPGNLFTRSLSSTSSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFATNMAPPSFGVVQQQQQPNGQSFMNQYMHNGQHDINISAQYTNFGANGMGGGGVGMNGVDMFNAILDQSKALSKIIEQNSRSNSGGPTNGGSSSAINIGGTKGSGDVTTLDLLGIGGGGGGGAAAAHGNFYGGTQQAESGAADEVWRNWSSKNAGFESFSATSSI* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1394 517 Gene3D Classic Zinc Finger 145 225 - -
Apr8g1394 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Apr8g1394 517 Gene3D Classic Zinc Finger 69 135 - -
Apr8g1394 517 MobiDBLite consensus disorder prediction 431 452 - -
Apr8g1394 517 MobiDBLite consensus disorder prediction 1 59 - -
Apr8g1394 517 MobiDBLite consensus disorder prediction 1 75 - -
Apr8g1394 517 SMART c2h2final6 90 112 IPR013087 -
Apr8g1394 517 SMART c2h2final6 131 161 IPR013087 -
Apr8g1394 517 SMART c2h2final6 166 186 IPR013087 -
Apr8g1394 517 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Apr8g1394 517 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Apr8g1394 517 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Apr8g1394 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 470 - -
Apr8g1394 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1394 Apr-Chr8 21396396 21400741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1394 47 345 IDZ Gene Family AT3G50700 55.728 5.19e-117 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1394 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1394 - - gmx:100813556 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1394 8 21396396 21400741 Apr8g1394 8 21396396 21400741 ECH
Apr8g1394 8 21396396 21400741 Apr4g1037 4 8565991 8569992 PCT