Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1392 ATGGACCACGCGCGATCGACGAACGGCGAGGAGAATGTGGGGATTCCCGACGACTTGCGGTGCAAGAGATCCGACGGGAAGCAATGGCGATGCACGGCGATGTCGATGCCGGACAAGACGGTGTGCGAGAAGCACTACATCCAAGCCAAGAAGAGAGCTGCGAATTCCGCTATGAGGGCTAACCTCAAGAAAGCTAAGAGGAAGTCTCAGTCACTGTCGCTTGGCGAATCGGATATTTATTTGGAGAGCAAGAGCGACGATTTCGACGTTCCTCTTTCCTCCATCAACCACTCCGCTAAGAAGTTCTTAGATAAGGTTTCTAAGAATCAGTTCCGTTACACGCCTGAAGCTGATTCCAGAAGAGCTTCCTCTGCGCTCCACGCTCGCAGCAACGTCGCTGATGATGACATGGATGCTGATGCTGACGCTGACGCTGATGCTGATGCTGATGTCGACGCGCCTCTCTACGAAGACAATTGGATCTCCTATGATTCTCCACCGGAGAAAAGATCGCATAGGAGCTTGGATGCTAATGCAACAACTGAATATTCCGATGGAACCTCCGGTTCTTCTGGAGACACCGGCGGGCAAACTTGTCATCAGTGCCGGAGGAATGACAGAGAACGAGTTACTTGGTGCCTCCGGTGTGATAGGAGGGGATACTGTGATGGCTGTTTATCAGCGTGGTACTCGGACTTTTCAGTGGATGAGATTCAGAGGATGTGTCCTGCTTGCCGTGGAATATGTAATTGTAAAACTTGCTTGCGAAGTGATAATTCAATTAAGGTTCGAATACGTGAGATACCTGTTATGGATAAGTTACAGTATCTCCATGTGCTGCTGTCGTCGGTGCTTCCTGTGGTGAAGCAGATCCATCGTGAACAGTGTTTTGAAGTAGAACTTGAAAAGAAGTTGCGGGGTGCTGAAATAGATCTTCCGAGGACAAAGTTGAATGCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGGTGTCCAAGTTGCTCATATGACTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCTCAATAAAGAACCCCAAACAGAGCAAGCAAAAACTTCTGATAGAAACATATTAAGTAAGTTTCCTCTTTGGAGATCCAATGACAACAGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTTATTCATCATTAAATTTAAGCCGAATTTTCAAGATGAACTGGGTTGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGCTGATGATACACCAGAAGCCGAGTTGAATGCTCTTAGACTATGCCAATATTCTCATAGAGAAGATAGTGATGATAATTATCTTTATTGTCCAACATCTGATGATCTCAAAACTGATGGGATTGGCAATTTTAGAAAGCACTGGAAAACTGGTGAACCCATTATTGTTAAGCAAGTTTTTGACGGGTCATCCATATCAAGCTGGGATCCAATGGTCATATGGAGAGGGGTTCTAGAGACATCAGATGAAAAAGTGAGAGATGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATAGAGCTTACTCAATTCATGGAAGGATACACCAAAGGGCATATTCATGAAAATGGTTGGCCACAATTATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATGTGAAGAATTTCTATTGTACCAAAGACCTGACTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTCATGGGATTAGTGATGAACTTGGCAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTGAAGATGAAGGACTGGCAGAAAACTAAAATTGAAACGATGACAAAAGCTTTTAAGGAATCTGAGGCAAAAGAATCTAGTGGGGATCCTCAAATATCTTCGAGGGAGAGTTCACCTGATTCATCACTTGGTACGAAAAGTAATGGACTGGATATGGATTCAAACCAGAGTAAATCAATTATGGACCAAGAGTTTGAAATTTATTCTAGTGCTGAAGGTAATATAGTCAACTGTAAACTTCCATTCACACAAAATGGAGATGTCTCTGAGAGAACACATCCAGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAACACATTGGAAGGAAATTGAGAAGTCATATGATATAGTAAATGAATTTGTTGCATCGCCTCTTTATGAGGGAGCTATTTTTCTTGACAAACACCACAAAATCAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCAATGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAATCCGCTGTCTCCCTAATGAACATGAAGCAAAGCTCCAAGTATTGGAGATTGGCAAAATATCTCTCTATGCGGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGCAGAGATCGGATATGGAGACCCCCATTTAACTGCTATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2811 0.4322 MDHARSTNGEENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLSLGESDIYLESKSDDFDVPLSSINHSAKKFLDKVSKNQFRYTPEADSRRASSALHARSNVADDDMDADADADADADADVDAPLYEDNWISYDSPPEKRSHRSLDANATTEYSDGTSGSSGDTGGQTCHQCRRNDRERVTWCLRCDRRGYCDGCLSAWYSDFSVDEIQRMCPACRGICNCKTCLRSDNSIKVRIREIPVMDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNFCRIPITDYHRRCPSCSYDLCLNCCRDLREATADLNKEPQTEQAKTSDRNILSKFPLWRSNDNRSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADDTPEAELNALRLCQYSHREDSDDNYLYCPTSDDLKTDGIGNFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGVLETSDEKVRDENRMVKAIDCLDGSEIDIELTQFMEGYTKGHIHENGWPQLLKLKDWPSPSACEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISHGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKMKDWQKTKIETMTKAFKESEAKESSGDPQISSRESSPDSSLGTKSNGLDMDSNQSKSIMDQEFEIYSSAEGNIVNCKLPFTQNGDVSERTHPGVLWDVFRRQDVPKVTEYLKTHWKEIEKSYDIVNEFVASPLYEGAIFLDKHHKIKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGEAVRLAEEIRCLPNEHEAKLQVLEIGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPHLTAMVSENYEKMVKRRQITCA* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1392 936 SMART cupin_9 579 866 IPR003347 -
Apr8g1392 936 Pfam WRC 16 56 IPR014977 -
Apr8g1392 936 SUPERFAMILY Clavaminate synthase-like 481 873 - -
Apr8g1392 936 MobiDBLite consensus disorder prediction 114 144 - -
Apr8g1392 936 MobiDBLite consensus disorder prediction 177 199 - -
Apr8g1392 936 MobiDBLite consensus disorder prediction 684 712 - -
Apr8g1392 936 PANTHER JMJC DOMAIN PROTEIN JMJ24 9 925 - -
Apr8g1392 936 Pfam JmjC domain, hydroxylase 746 845 IPR003347 -
Apr8g1392 936 MobiDBLite consensus disorder prediction 159 200 - -
Apr8g1392 936 ProSiteProfiles Zinc finger RING-type profile. 199 246 IPR001841 -
Apr8g1392 936 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 195 260 IPR018866 -
Apr8g1392 936 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Apr8g1392 936 MobiDBLite consensus disorder prediction 675 712 - -
Apr8g1392 936 ProSiteProfiles JmjC domain profile. 598 866 IPR003347 -
Apr8g1392 936 Gene3D Cupin 461 875 - -
Apr8g1392 936 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 925 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1392 Apr-Chr8 21388231 21394763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1392 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.41e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr8g1392 JmjC 1.1e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1392 K15601 - gmx:100792166 1610.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1392 8 21388231 21394763 Apr8g1392 8 21388231 21394763 ECH