Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr8g1391 | ATGACGGAAACGCGCGAAAACGCGTCGAATGAAACCGTTCGCGAATACGAGGAGAAAGAAGAAGACCAAAGTTTCGAAGAACTCGGTTTGGACGCTCGCCTCGTTCGTGCTCTGCTCAAAAAGGGAATCGAGAAACCCACTCCAATTCAGCGCGTCGCTATTCCTCTCATTTTGGAAGGTAAAGACGTGGTTGCACGAGCGAAAACAGGTTCGGGGAAAACGTTCGCGTATCTTCTCCCGTTGCTTCAGAAACTGTTTACCAGTAACGTTGATAGGAAGAAGCTAGCGCCCAATGCTTTTATTCTTGTCCCTACTCGCGAACTGTCTCAACAGGTATATGCGGAGGTATTGTCGCTTATTGAGTTGTGCAGAGTTCAACTGAAGGTTGTGCAGTTGAATAGCAATATGCTTGCTAATGACTTGCGGGCAGCATTGGCTGGACCCCCTGATGTCTTGATCTCCACTCCTGCTTGCATAGCGAAGTGTTTGTCCGGCGGCATACTTCGGGCAGCATCCATTAATGGATCGCTTGAAACTCTGGTTCTTGACGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATAAAAGCTTTTACACCTCATGTACCCAGAAGTTGTCAGTGTCTTCTTATGTCTGCAACATCAAGCGCTGATGTTGACAAGCTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTTTACCTGAAGTGGGAAATCATAAGGATGAGGTCATTCCTAAAAATGTTCAACAATTCTGGATCTCATGTCCTGGCAGTGATAAGTTGCTCTACATCCTTGCTGTGTTGAAGTTGGAGTTAGTCCAAAAGAAAGTTTTGATATTTACTAATACCATAGATGCGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGGTCAGGTCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGTCTACATATTATTGAGGAATTCAATGCAGGCCTGTTTGATTATCTAATTGCAACAGATGTTAGCCAGTCAATGGAGAAGGATGAAGCACCAAAGGAAAGTAATGTTGGATCACGAAAGTCTAGAAAACATGCTAAGACAAAAATAGATTCTGAATTTGGAGTTGTGAGGGGAATTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGGCGTACGGGAAGAGCATATAATTCTGGTGCTTCTATCTCTTTGGTTTCTGCAGATGAGATGGATACATTAGAAGAAATAAGATCTTTCGTTGGGGATGATGAAAACAAAGGCTCAAATTCCATTGCTGAGTTCCCCCTCCTCACAAAGAATGCAGTTGAATCTTTACGTTATAGGGCTGAGGATGTTGGAAAGAGTGTAACTAAAATTGCTGTTCGTGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAGGTTGAAAGCCCATTTTGAAACTAATCCGAGAGACCTAGATCTACTGAAACATGACAAAGTTTTGAGCAAGAATACCCCGCCTTCACACCTACGTGATGTGCCTGAATACCTATTAGACAAAACAACGAAAGAGGCAAGGGCAATGGTCAAGCTCGCAAGGGATGCAATGGGAAATAATAATCGCCGCAGGGGATCCAAGAGAAAAATGAGAAAAGGTGGAGACCCTCTGAAGGCTGTCTCTGCTGCGGTATCAAAAAGACCGCACAAAGTTGCTAGGAAGGCTGGTGCAAGCGAGAGCAACAATAGCAGTGATAGACATAAACGCCAAAAGAAAAAGGGTATTTTTGATTGA | 1815 | 0.427 | MTETRENASNETVREYEEKEEDQSFEELGLDARLVRALLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTSNVDRKKLAPNAFILVPTRELSQQVYAEVLSLIELCRVQLKVVQLNSNMLANDLRAALAGPPDVLISTPACIAKCLSGGILRAASINGSLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPGSDKLLYILAVLKLELVQKKVLIFTNTIDASFRLKLFLEKFGVRSAVLNPELPQNSRLHIIEEFNAGLFDYLIATDVSQSMEKDEAPKESNVGSRKSRKHAKTKIDSEFGVVRGIDFKNVFTVINFEMPQSVAGYVHRIGRTGRAYNSGASISLVSADEMDTLEEIRSFVGDDENKGSNSIAEFPLLTKNAVESLRYRAEDVGKSVTKIAVRESRAQDLRNEILNSERLKAHFETNPRDLDLLKHDKVLSKNTPPSHLRDVPEYLLDKTTKEARAMVKLARDAMGNNNRRRGSKRKMRKGGDPLKAVSAAVSKRPHKVARKAGASESNNSSDRHKRQKKKGIFD* | 605 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr8g1391 | 604 | CDD | DEADc_DDX56 | 30 | 237 | - | - | |
Apr8g1391 | 604 | Coils | Coil | 476 | 496 | - | - | |
Apr8g1391 | 604 | PANTHER | RNA HELICASE | 15 | 553 | - | - | |
Apr8g1391 | 604 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 264 | 452 | IPR001650 | - | |
Apr8g1391 | 604 | SMART | helicmild6 | 292 | 406 | IPR001650 | - | |
Apr8g1391 | 604 | SMART | ultradead3 | 42 | 255 | IPR014001 | - | |
Apr8g1391 | 604 | CDD | SF2_C_DEAD | 252 | 415 | - | - | |
Apr8g1391 | 604 | MobiDBLite | consensus disorder prediction | 541 | 604 | - | - | |
Apr8g1391 | 604 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 23 | 51 | IPR014014 | GO:0003724 | |
Apr8g1391 | 604 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 247 | 431 | IPR027417 | - | |
Apr8g1391 | 604 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 14 | 236 | IPR027417 | - | |
Apr8g1391 | 604 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Apr8g1391 | 604 | Gene3D | - | 1 | 237 | IPR027417 | - | |
Apr8g1391 | 604 | MobiDBLite | consensus disorder prediction | 587 | 604 | - | - | |
Apr8g1391 | 604 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX56-RELATED | 15 | 553 | - | - | |
Apr8g1391 | 604 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Apr8g1391 | 604 | Pfam | Helicase conserved C-terminal domain | 263 | 406 | IPR001650 | - | |
Apr8g1391 | 604 | Pfam | DEAD/DEAH box helicase | 47 | 224 | IPR011545 | GO:0003676|GO:0005524 | |
Apr8g1391 | 604 | Gene3D | - | 239 | 445 | IPR027417 | - | |
Apr8g1391 | 604 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 54 | 235 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr8g1391 | Apr-Chr8 | 21375123 | 21381456 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr8g1391 | 24 | 446 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.465 | 2.57e-38 | 144 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr8g1391 | K14810 | - | gmx:100800749 | 1022.69 |