Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1391 ATGACGGAAACGCGCGAAAACGCGTCGAATGAAACCGTTCGCGAATACGAGGAGAAAGAAGAAGACCAAAGTTTCGAAGAACTCGGTTTGGACGCTCGCCTCGTTCGTGCTCTGCTCAAAAAGGGAATCGAGAAACCCACTCCAATTCAGCGCGTCGCTATTCCTCTCATTTTGGAAGGTAAAGACGTGGTTGCACGAGCGAAAACAGGTTCGGGGAAAACGTTCGCGTATCTTCTCCCGTTGCTTCAGAAACTGTTTACCAGTAACGTTGATAGGAAGAAGCTAGCGCCCAATGCTTTTATTCTTGTCCCTACTCGCGAACTGTCTCAACAGGTATATGCGGAGGTATTGTCGCTTATTGAGTTGTGCAGAGTTCAACTGAAGGTTGTGCAGTTGAATAGCAATATGCTTGCTAATGACTTGCGGGCAGCATTGGCTGGACCCCCTGATGTCTTGATCTCCACTCCTGCTTGCATAGCGAAGTGTTTGTCCGGCGGCATACTTCGGGCAGCATCCATTAATGGATCGCTTGAAACTCTGGTTCTTGACGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATAAAAGCTTTTACACCTCATGTACCCAGAAGTTGTCAGTGTCTTCTTATGTCTGCAACATCAAGCGCTGATGTTGACAAGCTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTTTACCTGAAGTGGGAAATCATAAGGATGAGGTCATTCCTAAAAATGTTCAACAATTCTGGATCTCATGTCCTGGCAGTGATAAGTTGCTCTACATCCTTGCTGTGTTGAAGTTGGAGTTAGTCCAAAAGAAAGTTTTGATATTTACTAATACCATAGATGCGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGGGTCAGGTCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGTCTACATATTATTGAGGAATTCAATGCAGGCCTGTTTGATTATCTAATTGCAACAGATGTTAGCCAGTCAATGGAGAAGGATGAAGCACCAAAGGAAAGTAATGTTGGATCACGAAAGTCTAGAAAACATGCTAAGACAAAAATAGATTCTGAATTTGGAGTTGTGAGGGGAATTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGGCGTACGGGAAGAGCATATAATTCTGGTGCTTCTATCTCTTTGGTTTCTGCAGATGAGATGGATACATTAGAAGAAATAAGATCTTTCGTTGGGGATGATGAAAACAAAGGCTCAAATTCCATTGCTGAGTTCCCCCTCCTCACAAAGAATGCAGTTGAATCTTTACGTTATAGGGCTGAGGATGTTGGAAAGAGTGTAACTAAAATTGCTGTTCGTGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAGGTTGAAAGCCCATTTTGAAACTAATCCGAGAGACCTAGATCTACTGAAACATGACAAAGTTTTGAGCAAGAATACCCCGCCTTCACACCTACGTGATGTGCCTGAATACCTATTAGACAAAACAACGAAAGAGGCAAGGGCAATGGTCAAGCTCGCAAGGGATGCAATGGGAAATAATAATCGCCGCAGGGGATCCAAGAGAAAAATGAGAAAAGGTGGAGACCCTCTGAAGGCTGTCTCTGCTGCGGTATCAAAAAGACCGCACAAAGTTGCTAGGAAGGCTGGTGCAAGCGAGAGCAACAATAGCAGTGATAGACATAAACGCCAAAAGAAAAAGGGTATTTTTGATTGA 1815 0.427 MTETRENASNETVREYEEKEEDQSFEELGLDARLVRALLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTSNVDRKKLAPNAFILVPTRELSQQVYAEVLSLIELCRVQLKVVQLNSNMLANDLRAALAGPPDVLISTPACIAKCLSGGILRAASINGSLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPGSDKLLYILAVLKLELVQKKVLIFTNTIDASFRLKLFLEKFGVRSAVLNPELPQNSRLHIIEEFNAGLFDYLIATDVSQSMEKDEAPKESNVGSRKSRKHAKTKIDSEFGVVRGIDFKNVFTVINFEMPQSVAGYVHRIGRTGRAYNSGASISLVSADEMDTLEEIRSFVGDDENKGSNSIAEFPLLTKNAVESLRYRAEDVGKSVTKIAVRESRAQDLRNEILNSERLKAHFETNPRDLDLLKHDKVLSKNTPPSHLRDVPEYLLDKTTKEARAMVKLARDAMGNNNRRRGSKRKMRKGGDPLKAVSAAVSKRPHKVARKAGASESNNSSDRHKRQKKKGIFD* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1391 604 CDD DEADc_DDX56 30 237 - -
Apr8g1391 604 Coils Coil 476 496 - -
Apr8g1391 604 PANTHER RNA HELICASE 15 553 - -
Apr8g1391 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 452 IPR001650 -
Apr8g1391 604 SMART helicmild6 292 406 IPR001650 -
Apr8g1391 604 SMART ultradead3 42 255 IPR014001 -
Apr8g1391 604 CDD SF2_C_DEAD 252 415 - -
Apr8g1391 604 MobiDBLite consensus disorder prediction 541 604 - -
Apr8g1391 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724
Apr8g1391 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 431 IPR027417 -
Apr8g1391 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 236 IPR027417 -
Apr8g1391 604 MobiDBLite consensus disorder prediction 1 19 - -
Apr8g1391 604 Gene3D - 1 237 IPR027417 -
Apr8g1391 604 MobiDBLite consensus disorder prediction 587 604 - -
Apr8g1391 604 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 15 553 - -
Apr8g1391 604 MobiDBLite consensus disorder prediction 1 22 - -
Apr8g1391 604 Pfam Helicase conserved C-terminal domain 263 406 IPR001650 -
Apr8g1391 604 Pfam DEAD/DEAH box helicase 47 224 IPR011545 GO:0003676|GO:0005524
Apr8g1391 604 Gene3D - 239 445 IPR027417 -
Apr8g1391 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 235 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1391 Apr-Chr8 21375123 21381456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1391 24 446 Eukaryotic Initiation Factors Gene Family AT3G19760 27.465 2.57e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1391 K14810 - gmx:100800749 1022.69