Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1388 ATGGGTTTCGAGCATTCCAATGTTGTGGAAGCCATGAGAACTGTGGGTCCATCGATTCCCTATGCTGTGGAGCATATCCTCAAGAGCAGTTCTACTACTACTAATACTAACCGTGGAGCATCCACTACCCACACCGCTCGCAGAAAGCAACCTATGCGTGCGTGCCGTCTTGGTGGACAGTCTAGGATAGTCGACCATTTCAAATTCAACGATGTGAAAGACAACAAGGACATGCTTGAAGCACAGGATTTGGATATTGCTTCTGATTGGGAGCAGAGGGTTAGCTATCTGTTGCAAAAGCATTTTGGGTTTTCATCTTTGAAGAGTTTCCAGAAGGAAGCACTTGCTGCTTGGGTTGCTCATAAAGACTCTGTTGTTCTTGCTGCAACAGGAGCTGGGAAATCTCTGTGCTTTCAGATTCCTGCGTTGTTGTCTGGGAGAGTTGTAGTTGTGATTTCGCCCTTGATAAGCCTGATGAATGATCAGTGCTTAAAGTTAAAAGAACATGGAATCAGTGCTTGCTTTCTTGGCTCTGGTCAACCTGATGAGACTGTTGAACTGAAAGCAATGAAAGGCATGTATAGTATTGTATATGTTTGCCCAGAGACTATTGAAAGATTGATTGAACCGTTGCAGGAACTTGCAGAAAGTGGTCGTATTTGTTTATTTGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGCCGACTGGCTGTGCTTAGGGAAAACTTCAATACTAGCAAGCTAAAATCCCTGAAATTCAATATACCTCTGATGGCGTTGACAGCTACAGCTACAAAAAGAGTTCAAGAAGACATTTTAAAATCACTATGCATGTCAAAAGAAACAATTGTTGTTCTCACATCATTATTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTCGAACGTCACTGGCTTCTTATGCAAAAGATTTTCATGAATTGATTGAAGTATATGGTGGAAAGCATAATATTGATGGAAATGAAAAAGATTTCTTCTCAGATGATTCTTCCAATAGCTCCGATGCTTGTAGTACCTCAGATGAAGACATTATTTCTTCTTATGAGGTGGATGATGGCCAAGATGAATATGCTTATAGAGACATTAATGCAAATTATGCAATGCACTCAGGAAACACAGTTACCCAAGAGCCTTTGGAACAAGGACCAGCAATCATCTATGTACCCACCAGAAAAGAAACACTAAGAATTGCAGAGTATCTATGCAAGTTTGGTGTCAAGGCTGCTGCTTATAATGCAGGGCTCCCCAAATTGGATCTAAGAAGGGTTCATCAAGAGTTTCATGAAAATACTTTACAGGTTGTTGTTGCAACTGTAGCTTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCCTACTACCAAGGAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTTCATGCAAACCTAGCAAGCATACCATCACTTTTGCCAAGTAAGCAACGGTTAACTGAAGATCGGATAAAAATAGCATATATCCTGTTGTCTGATTGTTTCAGATATGGAATGAAAACTTCTTGCTGCCGGGCAAAGACACTTGTTGAATACTTCGGAGAGGATTTCAGTCATGACAAATGTCTCTTATGTGATGTATGCATTGGTGGTCCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGCTGCCCAAAATGCATGTAGCTACTCCATGGATTGCTCATACGATGGTGATATACATTCTGATTCCAGATATAGAAGACTAAGACAAAGGCCAGGTCTTAAGAAGCTAGTTGCAAAAATAAGGCAGCAGTTTCAAAAGTTTTTAACCACTAGTATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTGAAGGATACATCAGGGAAGGAGATGATAAGATCTATGTTCAGATAAAATATCCAGAGCTAACAGAATTGGGATTGGAATTAGTCGAGTCCAAGAATGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAAAGATAACTGACAAATCATTTTCCTCATTCTCAGAATGGGGAAAAGGCTGGGCTAATCCTGAGATCCGCCGTCAACGCCTGAAAAAAATGCGAGTCAATAGACAGCCAAAGATTCTGCATCCCACCAAAAGGCAGCGAAAGAGAAAAGCTAATAGAGTGAAACCTGAGGCGAAGACTTCTCGAGGTAGACTAGCAGCAAGACTATCAAAACTCTCAAAATCCAAGTAA 2319 0.4114 MGFEHSNVVEAMRTVGPSIPYAVEHILKSSSTTTNTNRGASTTHTARRKQPMRACRLGGQSRIVDHFKFNDVKDNKDMLEAQDLDIASDWEQRVSYLLQKHFGFSSLKSFQKEALAAWVAHKDSVVLAATGAGKSLCFQIPALLSGRVVVVISPLISLMNDQCLKLKEHGISACFLGSGQPDETVELKAMKGMYSIVYVCPETIERLIEPLQELAESGRICLFAIDEVHCVSKWGHDFRPAYSRLAVLRENFNTSKLKSLKFNIPLMALTATATKRVQEDILKSLCMSKETIVVLTSLFRPNLRFMVKHSRTSLASYAKDFHELIEVYGGKHNIDGNEKDFFSDDSSNSSDACSTSDEDIISSYEVDDGQDEYAYRDINANYAMHSGNTVTQEPLEQGPAIIYVPTRKETLRIAEYLCKFGVKAAAYNAGLPKLDLRRVHQEFHENTLQVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQGAGRAGRDGKLADCILHANLASIPSLLPSKQRLTEDRIKIAYILLSDCFRYGMKTSCCRAKTLVEYFGEDFSHDKCLLCDVCIGGPPQRQNLKEEACILLQTIAAQNACSYSMDCSYDGDIHSDSRYRRLRQRPGLKKLVAKIRQQFQKFLTTSILWWRGLARILEVEGYIREGDDKIYVQIKYPELTELGLELVESKNEQAFYVYPEADMLLEKITDKSFSSFSEWGKGWANPEIRRQRLKKMRVNRQPKILHPTKRQRKRKANRVKPEAKTSRGRLAARLSKLSKSK* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1388 772 SMART ultradead3 103 308 IPR014001 -
Apr8g1388 772 Gene3D - 505 689 IPR036388 -
Apr8g1388 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 503 IPR027417 -
Apr8g1388 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 529 IPR001650 -
Apr8g1388 772 MobiDBLite consensus disorder prediction 30 48 - -
Apr8g1388 772 MobiDBLite consensus disorder prediction 730 772 - -
Apr8g1388 772 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 97 326 IPR004589 GO:0004386|GO:0006310
Apr8g1388 772 Pfam Helicase conserved C-terminal domain 395 491 IPR001650 -
Apr8g1388 772 PANTHER DNA HELICASE RECQ FAMILY MEMBER 381 757 - -
Apr8g1388 772 PANTHER DNA HELICASE RECQ FAMILY MEMBER 69 341 - -
Apr8g1388 772 Pfam RecQ zinc-binding 527 565 IPR032284 -
Apr8g1388 772 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 29 IPR015940 -
Apr8g1388 772 Gene3D - 376 500 IPR027417 -
Apr8g1388 772 Pfam DEAD/DEAH box helicase 110 278 IPR011545 GO:0003676|GO:0005524
Apr8g1388 772 Gene3D - 65 298 IPR027417 -
Apr8g1388 772 MobiDBLite consensus disorder prediction 30 49 - -
Apr8g1388 772 MobiDBLite consensus disorder prediction 730 751 - -
Apr8g1388 772 CDD DEXHc_RecQ 98 294 - -
Apr8g1388 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 291 IPR014001 -
Apr8g1388 772 SMART helicmild6 411 492 IPR001650 -
Apr8g1388 772 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 381 757 - -
Apr8g1388 772 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 69 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1388 Apr-Chr8 21312479 21318917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1388 393 522 Eukaryotic Initiation Factors Gene Family AT5G11170 26.154 3.52e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1388 K10900 - gmx:100793222 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1388 8 21312479 21318917 Apr8g1388 8 21312479 21318917 ECH