Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr8g1388 | ATGGGTTTCGAGCATTCCAATGTTGTGGAAGCCATGAGAACTGTGGGTCCATCGATTCCCTATGCTGTGGAGCATATCCTCAAGAGCAGTTCTACTACTACTAATACTAACCGTGGAGCATCCACTACCCACACCGCTCGCAGAAAGCAACCTATGCGTGCGTGCCGTCTTGGTGGACAGTCTAGGATAGTCGACCATTTCAAATTCAACGATGTGAAAGACAACAAGGACATGCTTGAAGCACAGGATTTGGATATTGCTTCTGATTGGGAGCAGAGGGTTAGCTATCTGTTGCAAAAGCATTTTGGGTTTTCATCTTTGAAGAGTTTCCAGAAGGAAGCACTTGCTGCTTGGGTTGCTCATAAAGACTCTGTTGTTCTTGCTGCAACAGGAGCTGGGAAATCTCTGTGCTTTCAGATTCCTGCGTTGTTGTCTGGGAGAGTTGTAGTTGTGATTTCGCCCTTGATAAGCCTGATGAATGATCAGTGCTTAAAGTTAAAAGAACATGGAATCAGTGCTTGCTTTCTTGGCTCTGGTCAACCTGATGAGACTGTTGAACTGAAAGCAATGAAAGGCATGTATAGTATTGTATATGTTTGCCCAGAGACTATTGAAAGATTGATTGAACCGTTGCAGGAACTTGCAGAAAGTGGTCGTATTTGTTTATTTGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGCCGACTGGCTGTGCTTAGGGAAAACTTCAATACTAGCAAGCTAAAATCCCTGAAATTCAATATACCTCTGATGGCGTTGACAGCTACAGCTACAAAAAGAGTTCAAGAAGACATTTTAAAATCACTATGCATGTCAAAAGAAACAATTGTTGTTCTCACATCATTATTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTCGAACGTCACTGGCTTCTTATGCAAAAGATTTTCATGAATTGATTGAAGTATATGGTGGAAAGCATAATATTGATGGAAATGAAAAAGATTTCTTCTCAGATGATTCTTCCAATAGCTCCGATGCTTGTAGTACCTCAGATGAAGACATTATTTCTTCTTATGAGGTGGATGATGGCCAAGATGAATATGCTTATAGAGACATTAATGCAAATTATGCAATGCACTCAGGAAACACAGTTACCCAAGAGCCTTTGGAACAAGGACCAGCAATCATCTATGTACCCACCAGAAAAGAAACACTAAGAATTGCAGAGTATCTATGCAAGTTTGGTGTCAAGGCTGCTGCTTATAATGCAGGGCTCCCCAAATTGGATCTAAGAAGGGTTCATCAAGAGTTTCATGAAAATACTTTACAGGTTGTTGTTGCAACTGTAGCTTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCCTACTACCAAGGAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTTCATGCAAACCTAGCAAGCATACCATCACTTTTGCCAAGTAAGCAACGGTTAACTGAAGATCGGATAAAAATAGCATATATCCTGTTGTCTGATTGTTTCAGATATGGAATGAAAACTTCTTGCTGCCGGGCAAAGACACTTGTTGAATACTTCGGAGAGGATTTCAGTCATGACAAATGTCTCTTATGTGATGTATGCATTGGTGGTCCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGCTGCCCAAAATGCATGTAGCTACTCCATGGATTGCTCATACGATGGTGATATACATTCTGATTCCAGATATAGAAGACTAAGACAAAGGCCAGGTCTTAAGAAGCTAGTTGCAAAAATAAGGCAGCAGTTTCAAAAGTTTTTAACCACTAGTATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTGAAGGATACATCAGGGAAGGAGATGATAAGATCTATGTTCAGATAAAATATCCAGAGCTAACAGAATTGGGATTGGAATTAGTCGAGTCCAAGAATGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAAAGATAACTGACAAATCATTTTCCTCATTCTCAGAATGGGGAAAAGGCTGGGCTAATCCTGAGATCCGCCGTCAACGCCTGAAAAAAATGCGAGTCAATAGACAGCCAAAGATTCTGCATCCCACCAAAAGGCAGCGAAAGAGAAAAGCTAATAGAGTGAAACCTGAGGCGAAGACTTCTCGAGGTAGACTAGCAGCAAGACTATCAAAACTCTCAAAATCCAAGTAA | 2319 | 0.4114 | MGFEHSNVVEAMRTVGPSIPYAVEHILKSSSTTTNTNRGASTTHTARRKQPMRACRLGGQSRIVDHFKFNDVKDNKDMLEAQDLDIASDWEQRVSYLLQKHFGFSSLKSFQKEALAAWVAHKDSVVLAATGAGKSLCFQIPALLSGRVVVVISPLISLMNDQCLKLKEHGISACFLGSGQPDETVELKAMKGMYSIVYVCPETIERLIEPLQELAESGRICLFAIDEVHCVSKWGHDFRPAYSRLAVLRENFNTSKLKSLKFNIPLMALTATATKRVQEDILKSLCMSKETIVVLTSLFRPNLRFMVKHSRTSLASYAKDFHELIEVYGGKHNIDGNEKDFFSDDSSNSSDACSTSDEDIISSYEVDDGQDEYAYRDINANYAMHSGNTVTQEPLEQGPAIIYVPTRKETLRIAEYLCKFGVKAAAYNAGLPKLDLRRVHQEFHENTLQVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQGAGRAGRDGKLADCILHANLASIPSLLPSKQRLTEDRIKIAYILLSDCFRYGMKTSCCRAKTLVEYFGEDFSHDKCLLCDVCIGGPPQRQNLKEEACILLQTIAAQNACSYSMDCSYDGDIHSDSRYRRLRQRPGLKKLVAKIRQQFQKFLTTSILWWRGLARILEVEGYIREGDDKIYVQIKYPELTELGLELVESKNEQAFYVYPEADMLLEKITDKSFSSFSEWGKGWANPEIRRQRLKKMRVNRQPKILHPTKRQRKRKANRVKPEAKTSRGRLAARLSKLSKSK* | 773 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr8g1388 | 772 | SMART | ultradead3 | 103 | 308 | IPR014001 | - | |
Apr8g1388 | 772 | Gene3D | - | 505 | 689 | IPR036388 | - | |
Apr8g1388 | 772 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 146 | 503 | IPR027417 | - | |
Apr8g1388 | 772 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 389 | 529 | IPR001650 | - | |
Apr8g1388 | 772 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
Apr8g1388 | 772 | MobiDBLite | consensus disorder prediction | 730 | 772 | - | - | |
Apr8g1388 | 772 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 97 | 326 | IPR004589 | GO:0004386|GO:0006310 | |
Apr8g1388 | 772 | Pfam | Helicase conserved C-terminal domain | 395 | 491 | IPR001650 | - | |
Apr8g1388 | 772 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 381 | 757 | - | - | |
Apr8g1388 | 772 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 69 | 341 | - | - | |
Apr8g1388 | 772 | Pfam | RecQ zinc-binding | 527 | 565 | IPR032284 | - | |
Apr8g1388 | 772 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 1 | 29 | IPR015940 | - | |
Apr8g1388 | 772 | Gene3D | - | 376 | 500 | IPR027417 | - | |
Apr8g1388 | 772 | Pfam | DEAD/DEAH box helicase | 110 | 278 | IPR011545 | GO:0003676|GO:0005524 | |
Apr8g1388 | 772 | Gene3D | - | 65 | 298 | IPR027417 | - | |
Apr8g1388 | 772 | MobiDBLite | consensus disorder prediction | 30 | 49 | - | - | |
Apr8g1388 | 772 | MobiDBLite | consensus disorder prediction | 730 | 751 | - | - | |
Apr8g1388 | 772 | CDD | DEXHc_RecQ | 98 | 294 | - | - | |
Apr8g1388 | 772 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 115 | 291 | IPR014001 | - | |
Apr8g1388 | 772 | SMART | helicmild6 | 411 | 492 | IPR001650 | - | |
Apr8g1388 | 772 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE SIM | 381 | 757 | - | - | |
Apr8g1388 | 772 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE SIM | 69 | 341 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr8g1388 | Apr-Chr8 | 21312479 | 21318917 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr8g1388 | 393 | 522 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 26.154 | 3.52e-06 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr8g1388 | K10900 | - | gmx:100793222 | 1075.46 |