Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1387 ATGGGCTGTAGTTATGAGCATCTTACCATGATCTTCATCATCACCCTCTTGATTCTTCTATCCTCACAAAGAACCCACATTTTGACCCTTGGTGGTTCTCCATTCAATGCAGCTGGAACCTTCCACGTTCATGGCCTACCAGAGATGTATATCATGGAGAAGAATGAACAACAAAATGATAACCAGATTAAGAAAATCTCAGGACTTGATGAGAATGAAGAGAAACAAGCTTTCATAGTGGAAAAGTTTAGATCTTTACTTGGACTCGAGAGTTTCCACACAAGGGTACCATCCAATGGCCATGCTGAGTTTCTCTCTCCCTCACCTTCTCCATCACCCAACATCGAAGCTGAGGCTCCAACTCCTTCTCCTTCTCCGGTTCCACACGTGCACCCTCATCTTCATCATCCAATACATCACCCTCCTAAGAATCCACCACTCAACCAAACTCATCATGAAGATAGAGGCAGGGCTAAAAGAATACTAATAGCTGTTCTTGTATCCGCGGGAATTGCCACATTAATTGGTGCTTGTGGGTTAATCTTGGTCTGCAGGAAATTCACAAACCACACAAAGAAGCCCAAAAGGACAATGCCACTATGTAGCAAGAGCAAAGGAAGTGGAGACACTTACCAAAATTCATCAAGCAAGGTGAGTTTAAACTCAGGACTAGATCTGTTTTATCTTAATGTTTTAGGTGAGGACATAGAGCAACACGCTTGCACCTTGAAAAAGACTTGCAAGGATGGTTCAGAGTATGACAACTTTAGCAGTTCTTCCACGAAGGAAATTGTATCTGTTCATGAAGATGTGGAATCAGCGAAAGGTGAAGCTGAATCTGGTAATGGCAACCCTTCTTCTGGGGATAAAACTATCCCTGAAGATTGTCATTCATCAGATGATGAAAGTTTTCATTCCGTTGTTGAAGATTCACAATCAAATATAAGACTTTCCAATGCTTCAGCTGGTAGCCTTAGTGACACCCTTTCTTTGTCCCCACAAAATTCAAGTTCCTTAGCAAACCAATTTCCTTGTACTCCCCAAAACTCAATCTCAAATACACAGTCTCAGCAAACACCACATAGTCCAAAACAATATGAGCAAGAAATTGAGTCGTCTTTCCAATGTTCAAAAGCCTCTACTTCTTTCCCTCCCCCTCCTCCACCCCTTCCACCCCCACCTCCACCGCCATTGCAAATGCCACTTTTTTCTTTGCATTCTCTCACTTCTTCATCTAGAGTTTCCTCTCACTCTCCACTCTCTTTAACATCTAATAATTTATCATCTCCGGTAAATTCAGACACTTTCTCAGGCTTAAATCAAAGTCCAGAGAAAGAGTTGGTTTCCCCAGCTGAACCTTACCCTACAAAATCTCCTTCCAACATTCCCCCACCACCATACCCACCTCCATTTCTAAAAGGTAATAACAACAGTGCCAAAACCCCACCTCCTCCACCATCTCAACTCCCTCAATTTACCCCACTAGGTAAAGATGGTGCACCATTGCCCAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCTGCTCCCAATCGTACAATGGTTTGGGATAAGCTACGATCAAGCTCATTCGAGTTGGATGAGGAAATGATCGAGTCACTTTTTGGCTACAATTTACAAAATTCAATTAAGAATGACGAAACAAGGAGTAAAACCCCGTCTCCAAGCAAGCATGTGCTTGAGCCAAAACGGCTGCAGAACATAACAATACTCTCAAAGGCCCTGAATGCGACATCTGAGCATGTATGCGAGGCCTTAATGCAAGGGAAGGGGTTGTCTTTGCAACAACTGGAGGCACTAGTTAAAATGGTACCCACCAAAGAAGAAGAGTCCAAGCTCTCCAATTATAAAGGCGACATCAATGAATTGGGGTCCGCCGAAAGGTTTGTGAGGGCAATGCTCAACGTTCCATTTGCGTTTCAACGGGTGGAAGGCATGCTTTTCAGAGAAACCTTTGATGATGAAGTTGTTCACCTCAGAAACTCATTTTCAATGCTTGAGGAGGCATGCAAGGAACTAAAATCGAGCAGGCTCTTCTTGAAGTTATTAGAAGCAGTGCTCAAAACAGGGAACCGAATGAATGTTGGAACAATAAGAGGAGGTGCTAGAGCTTTTAAGCTAGATGCTCTTCTAAAACTTGCAGATGTTAAGGGAACTGATGGTAAAACTACGTTGCTTCATTTTGTTGTTCAAGAGATTGTTCGTTCAGAAGGAATAAGAGTTTCAGATAGCATTATGGGAAAAATAAGCCAGAAAAGTAAGAACAGAACTGAGGAAGAAAAGGAAGAAGATTACAAAAGGATGGGATTAGAACTGGTTTCTGGTCTTAGCACTGAGTTATACAATGTGAAAAAGACAGCTACTATTGACTTGGATGTTCTTGCAAGCTCTGTGTCAAACCTTTCAGAAGGAATGGCTAAGCTGCAACATCTATTGGACAAGGAGTTGCATAAGGATGAAAGAAGCATCAACTTTGTACACTCTTTGAAGTCATTCTTGAACTATGCAGATGGGAACCTGAGGGAGTTGCAAGGAGATGAAGAGAGAGTGTTGGCACGTGTGAAAGAGATTACTGAGTATTTTCATGGGGATGTGAGCAAGGAAGATGCAAATCCACTTAGGATCTTTGTGATTGTGAGAGATTTTCTGGGCATGTTAGATAATGTGTGTAAAGAACTTAGAAGGTCTAAAACTCCTCGTAGCCCAAACCCACTTGCTCCTTTCAGATAG 2751 0.4235 MGCSYEHLTMIFIITLLILLSSQRTHILTLGGSPFNAAGTFHVHGLPEMYIMEKNEQQNDNQIKKISGLDENEEKQAFIVEKFRSLLGLESFHTRVPSNGHAEFLSPSPSPSPNIEAEAPTPSPSPVPHVHPHLHHPIHHPPKNPPLNQTHHEDRGRAKRILIAVLVSAGIATLIGACGLILVCRKFTNHTKKPKRTMPLCSKSKGSGDTYQNSSSKVSLNSGLDLFYLNVLGEDIEQHACTLKKTCKDGSEYDNFSSSSTKEIVSVHEDVESAKGEAESGNGNPSSGDKTIPEDCHSSDDESFHSVVEDSQSNIRLSNASAGSLSDTLSLSPQNSSSLANQFPCTPQNSISNTQSQQTPHSPKQYEQEIESSFQCSKASTSFPPPPPPLPPPPPPPLQMPLFSLHSLTSSSRVSSHSPLSLTSNNLSSPVNSDTFSGLNQSPEKELVSPAEPYPTKSPSNIPPPPYPPPFLKGNNNSAKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQNSIKNDETRSKTPSPSKHVLEPKRLQNITILSKALNATSEHVCEALMQGKGLSLQQLEALVKMVPTKEEESKLSNYKGDINELGSAERFVRAMLNVPFAFQRVEGMLFRETFDDEVVHLRNSFSMLEEACKELKSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQKSKNRTEEEKEEDYKRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLSEGMAKLQHLLDKELHKDERSINFVHSLKSFLNYADGNLRELQGDEERVLARVKEITEYFHGDVSKEDANPLRIFVIVRDFLGMLDNVCKELRRSKTPRSPNPLAPFR* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1387 916 SMART it6_source 495 908 IPR015425 -
Apr8g1387 916 MobiDBLite consensus disorder prediction 381 401 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 403 444 - -
Apr8g1387 916 ProSiteProfiles Formin homology-2 (FH2) domain profile. 495 916 IPR015425 -
Apr8g1387 916 Coils Coil 52 72 - -
Apr8g1387 916 Pfam Formin Homology 2 Domain 499 893 IPR015425 -
Apr8g1387 916 MobiDBLite consensus disorder prediction 324 506 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 203 217 - -
Apr8g1387 916 PANTHER FORMIN-LIKE PROTEIN 52 394 - -
Apr8g1387 916 PANTHER FORMIN-LIKE PROTEIN 374 916 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 100 154 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 113 131 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 324 380 - -
Apr8g1387 916 PANTHER FORMIN-RELATED 52 394 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Apr8g1387 916 PANTHER FORMIN-RELATED 374 916 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Apr8g1387 916 MobiDBLite consensus disorder prediction 456 472 - -
Apr8g1387 916 SUPERFAMILY Formin homology 2 domain (FH2 domain) 508 904 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 293 307 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 270 312 - -
Apr8g1387 916 MobiDBLite consensus disorder prediction 193 217 - -
Apr8g1387 916 Gene3D Formin, FH2 domain 518 908 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1387 Apr-Chr8 21265935 21269490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1387 480 916 FH2 protein (formin) Gene Family AT3G05470 75.000 0.0 673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1387 8 21265935 21269490 Apr8g1387 8 21265935 21269490 ECH
Apr4g0710 4 5813295 5817386 Apr8g1387 8 21265935 21269490 PCT