Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1378 ATGAGTCGAGGAGGTGCAGCAGGTGCCAAGGGAAAGAAGAAGGGGGCTACATTCATCATTGACTGCGCCAAGCCAGTGGAGGACAAGATCATGGACATTGCCTCTCTCGAGAAGTTCGTCCAAGAGAGGATTAAGGTCGGTGGCAAGGCCGGTGCTCTCGGCGACACTGTCTCCGTCGCACGCGAGAAGACCAAGATCATCGTTACTTCTGACAGCAACTTCTCTAAACGCTACCTTAAGTACTTGACAAAGAAGTACTTGAAGAAACACAATGTGCGGGACTGGCTCAGAGTGATTGCTTCTAACAAAGATAGAAGTGTTTATGAACTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAA 375 0.48 MSRGGAAGAKGKKKGATFIIDCAKPVEDKIMDIASLEKFVQERIKVGGKAGALGDTVSVAREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1378 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Apr8g1378 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Apr8g1378 124 Gene3D - 6 124 IPR038526 -
Apr8g1378 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1378 Apr-Chr8 21122702 21123796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1378 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.871 3.54e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1378 K02891 - gmx:100499952 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1378 8 21122702 21123796 Apr8g1378 8 21122702 21123796 ECH
Apr4g0697 4 5698535 5700063 Apr8g1378 8 21122702 21123796 PCT