Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1375 ATGGGAATCGATCTCAAAGCCGGAGGTAAGAGCAAAAAGACGAAGAGAACAGCACCAAAGTCCAATGATATCTATCTCAAACTCTTGGTCAAGCTTTATCGCTTCCTTGTTCGGAGAACTGGCAGCAATTTCAATGCTGTAATTCTCAAGCGGTTGTTCATGAGCAAGGTTAACAAGCCTCCACTATCTTTGTCAAGGTTGATTAAGTATATGAAGGGAAAGGAAGATAAGATTGCTGTGGTGGTGGGGACTATAACTGATGATATTCGTGCTTATGAAGTTCCATCCTTAAAAGTAACCGCACTCAGGTTTACTGAGACTGCACGTGCAAGAATAGAAAAGGCAGGTGGTGAATGCTTGACATTTGATCAGTTGGCTCTTAGGGCCCCTCTGGGACAGAACACGGTTCTTCTTAGAGGCCCAAAGAATGCACGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTGCCTCATAGCCACACCAAGCCTTATGTTCGTTCCAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAAGAGGAACAGCCGAGGATTTAGGGTTTGA 564 0.4557 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYMKGKEDKIAVVVGTITDDIRAYEVPSLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1375 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Apr8g1375 187 MobiDBLite consensus disorder prediction 151 187 - -
Apr8g1375 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 187 - -
Apr8g1375 187 Gene3D - 1 187 - -
Apr8g1375 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Apr8g1375 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Apr8g1375 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1375 Apr-Chr8 21046113 21048728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1375 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 4.00e-104 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1375 K02883 - gmx:100499789 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0693 4 5669737 5671656 Apr8g1375 8 21046113 21048728 PCT