Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1373 ATGGTTGGGGAAGATAAGCTGAAGAAGAGGAGAATCGTCATCATTGGCATCTCTACCATCTTTCTAGTGGCTATGGTCATTGCCCTCACGGTTGGCGTCAACCTCAAGCAACTTACTTCCAACGATGATGAACAAAACGATAAGGCCCATGTTGCTGCCACTCTAAAAGCAGTGAAAACCATTTGCCACCCCACAGATTACAAGAAAGAATGTGAAGAAAGCCTCAAAGCAGAGGCTGGTAACACCACGGACCCAAGAGAACTCATCAAAATCGCCTTCAACATAACCATCAAGAAAATCGGTGATGAACTTAAGAAAACAAATCTCATGGAAGAGGCTGAGAAGGACCACAGAACCAAAATGGCACTTGACACATGCAAACAACTCATGGATCTTTCCATTGGGGAGTTCGAGAGGTCGCTTGAGAAAATGGGCACCTTTAATCTCAACAATCTCGATAATATCCTCTCGAGTTTGAAGGTTTGGCTCAGTGGTGCTATCACATACCAAGATACCTGCTTGGATGGTTTCGAGAACACCACGAACGAAGCGGGTTTGAAGATGAAGAACGCATTGACAACTACCATGCACATGAGTAGCAATGCCCTTGCCATCATCTCTGAATTGGCTAAAACTTTCTCTGATTCGGGTTTGACAACAGATGGGCGTAGCCTCATTCAGAATGATCAACGCGATGACGTTAAGATTCCCTCTTGGGGTGATGATGATGATGGTGTTGGTGTTCGTAGACTCCTTCATTCAAGTCCACAAAAACTTAAGGCTAATGTGGTTGTAGCCAAAAATGGTAGTGGAAAGTTCAAGAAAATCAATGAGGCTTTGAAACGGGTGCCCAAGAACAACAAAAAGCCATTCTTGATCTACATCAAAGAGGGCGTTTACCATGAGTATATTGAAGTTACCAAGCAAATGACCCATGTTGTGCTTATCGGTGATGGTGGCAACAAAACTCGGATCACTGGTAACAAAAACTTCATAGATGGGGTTAACACTTACAGAACCCCCACTGTTGCTGTTCAAGGAGATTACTTTGTGGCCATCAACATAGGATTTGAGAACTCAGCTGGCCCCCACAAACATCAAGCAGTAGCCATAAGGGTCCAAGCAGACAAGGCCATCTTCTATAAATGCACAATGGATGGGTATCAGGACACACTATATGCCCATGCCATGCGACAGTTCTATCGAGATTGCACCATTTCAGGTACCATCGACTTTGTCTTTGGTGATGCAGTGGCTGTTTTCCAAAACTGTACGTTCGTGGTGAGAAAACCATTGGAAAATCAACAATGCATTGTGACCGCACAAGGTAGAAAGGAGAGGCATCAACCATCAGGAATAGTAATTCGAGGAAGCTCCATTGTGTCCGATCATAAGGTTAAGTTTGACAGCAAGGCTTACCTGGCTCGTCCATGGAAGAATTACTCAAGGACCATCTTCATGGACACCTACATTGGGGGTTTGATTCAACCCGATGGGTATATGCCATGGCAAGGACCAAATGGTCTTTCTGGTATGAACACTTGTTTCTATGCTGAGTTTAATAACACCGGTCCTGGTTCAAACAAATCAAAGCGTGTAAAGTGGCCCGGGATCAAGACCCTCACATCACAATCTGCAAGCCATTTCTCACCGCTCAAGTTCTTTCATGGCGATGATTGGATTAAAGTTACTAGGATTCCTTACTCCTCTGGTATCCCCAAACCCAAGAACCCTAAATAA 1740 0.4431 MVGEDKLKKRRIVIIGISTIFLVAMVIALTVGVNLKQLTSNDDEQNDKAHVAATLKAVKTICHPTDYKKECEESLKAEAGNTTDPRELIKIAFNITIKKIGDELKKTNLMEEAEKDHRTKMALDTCKQLMDLSIGEFERSLEKMGTFNLNNLDNILSSLKVWLSGAITYQDTCLDGFENTTNEAGLKMKNALTTTMHMSSNALAIISELAKTFSDSGLTTDGRSLIQNDQRDDVKIPSWGDDDDGVGVRRLLHSSPQKLKANVVVAKNGSGKFKKINEALKRVPKNNKKPFLIYIKEGVYHEYIEVTKQMTHVVLIGDGGNKTRITGNKNFIDGVNTYRTPTVAVQGDYFVAINIGFENSAGPHKHQAVAIRVQADKAIFYKCTMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVFQNCTFVVRKPLENQQCIVTAQGRKERHQPSGIVIRGSSIVSDHKVKFDSKAYLARPWKNYSRTIFMDTYIGGLIQPDGYMPWQGPNGLSGMNTCFYAEFNNTGPGSNKSKRVKWPGIKTLTSQSASHFSPLKFFHGDDWIKVTRIPYSSGIPKPKNPK* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1373 579 Pfam Pectinesterase 262 558 IPR000070 GO:0030599|GO:0042545
Apr8g1373 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 209 IPR006501 GO:0004857
Apr8g1373 579 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Apr8g1373 579 SMART PMEI_2 53 205 IPR006501 GO:0004857
Apr8g1373 579 PANTHER PECTINESTERASE 11 573 - -
Apr8g1373 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Apr8g1373 579 PANTHER PECTINESTERASE 11 573 - -
Apr8g1373 579 CDD PMEI-like_3 60 211 - -
Apr8g1373 579 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Apr8g1373 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Apr8g1373 579 Gene3D - 256 572 IPR012334 -
Apr8g1373 579 SUPERFAMILY Pectin lyase-like 259 571 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1373 Apr-Chr8 21018966 21021037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1373 4 572 Carbohydrate Esterase AT3G05610 49.739 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1373 K01051 - gmx:100794799 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1373 8 21018966 21021037 Apr8g1373 8 21018966 21021037 ECH
Apr4g0688 4 5641558 5643740 Apr8g1373 8 21018966 21021037 PCT