Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1372 ATGGCCACAAATTTGAAAGCATCGAAATCCATATACACCTTTGTTTTCCTCTTCATCCTCTTCTTTTCATCCTCTCATGCAGCTTTCTCCTCCTCCCAAGATGACACGTGCTACACTACACCCTATCCAGCATTCTGCAAAACTACCTTGCCTCCTCAATACATATCCATACATGACCAATGCATTTTCTTCCTTCAACAATCCTTATCAATAACAAAAACCATTCTTCAATCCATCTCTTCTTATCTTAGAGACCAGTTTATTCCTGATTCAACACTACATGCCCTTGAAGATTGTCTTAATTTAGCTGAACTTAACACTGATTTCTTGTCCAATGTACTCCAAGCTATTGAAAACCCTTTGAGTAGCTATCAGGTTTATGAATTGCAAACCATGCTTAGTGCCATTTTGACCAATCAACAAACTTGCTTGGATGGTTTTCTCGAGGTAACTCCCTATTCTAGAGTAACCAGTGCTTTATCAAGCCCTCTCTCTGATGGGATCAAACTTTATAGCATATCACTGGCCCTTTTCACACGCGGTTGGGTTAGTGATGCCACAGCAAGTTCAACTACAGAGAAGAGAGTTGAGACTATTATTAATAGAAAGCTATTGCAAACAGACGTTGACAGTGTAGTGGTGACACAAAAAGTGGTGGTGAACCCAGATGGGTCTGGTGACTTCACCACCATAAATAAAGCAGTGGATGCTGCACCTAACAATGCCGGCACAAACAACGGGTACCATGCAATTTATGTTGTTGCTGGAATTTACAATGAGTACGTGTCTATTCCTAAGAGCAAGGAGAATCTAATGATCGTTGGAGATGGCATCAACCGCACTGTGATCACTGGCAATCGCAGCGTTGCTGATGGTTGGACCACTTTCCAATCTGCAACTTTCGCTGTGGTTGGAACAGGGTTTGTTGCAGTGAACATAACATTTCGTAACACTGCGGGGGCCAGCAAGTATCAAGCGGTGGCTGTGAGAAACGGTGCGGACATGTCCACATTCTACAATTGTAGTTTTGAAGGCTACCAAGACACATTGTATGTATTTTCCCTTAGGCAATTCTACAAAAACTGTGACATTTATGGCACAGTAGATTTTATATTTGGCAATGCTGCAGCAGTATTCCAGGATTGTAACATGTACCCAAGACTTCCAATGCCAAACCAATTCAATTCAATCACAGCTCAAGGCAGAACAGATCCTAACCAAAACACTGGCGTCTCCATTCAAAACTGTTGCATGATTGCAGCCAGTGAGTTGAGTGATGCTAATAACAATTATAATGACATAAGTACATATTTGGGTCGGCCTTGGAAGGAGTATTCAAGGACAGTTTGCATGCAATCTTTCATGGATGGCCTAATTGATCCAAAGGGTTGGGTTGAATGGTCAGGGGATTTTGCTTTAAGCACATTGTATTATGCTGAGTTTGCTAACTGGGGACCAGGTTCAAATACTAGCAACAGGGTCACATGGGAAGGGTACCATCTCATTGACCAAAATGATGCTGGTGATTTCACGGTAAGCAAATTTATTCAAGGTGATCAATGGCTGCCCAAGACAGGAGTGCCTTTCAAAGCCGGGTTACAGTGA 1605 0.4224 MATNLKASKSIYTFVFLFILFFSSSHAAFSSSQDDTCYTTPYPAFCKTTLPPQYISIHDQCIFFLQQSLSITKTILQSISSYLRDQFIPDSTLHALEDCLNLAELNTDFLSNVLQAIENPLSSYQVYELQTMLSAILTNQQTCLDGFLEVTPYSRVTSALSSPLSDGIKLYSISLALFTRGWVSDATASSTTEKRVETIINRKLLQTDVDSVVVTQKVVVNPDGSGDFTTINKAVDAAPNNAGTNNGYHAIYVVAGIYNEYVSIPKSKENLMIVGDGINRTVITGNRSVADGWTTFQSATFAVVGTGFVAVNITFRNTAGASKYQAVAVRNGADMSTFYNCSFEGYQDTLYVFSLRQFYKNCDIYGTVDFIFGNAAAVFQDCNMYPRLPMPNQFNSITAQGRTDPNQNTGVSIQNCCMIAASELSDANNNYNDISTYLGRPWKEYSRTVCMQSFMDGLIDPKGWVEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDQNDAGDFTVSKFIQGDQWLPKTGVPFKAGLQ* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1372 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 178 IPR006501 GO:0004857
Apr8g1372 534 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Apr8g1372 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 18 532 - -
Apr8g1372 534 CDD PMEI-like_3 37 182 - -
Apr8g1372 534 Pfam Pectinesterase 218 519 IPR000070 GO:0030599|GO:0042545
Apr8g1372 534 PANTHER PECTINESTERASE 18 532 - -
Apr8g1372 534 Gene3D - 211 533 IPR012334 -
Apr8g1372 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 180 IPR035513 -
Apr8g1372 534 Pfam Plant invertase/pectin methylesterase inhibitor 34 177 IPR006501 GO:0004857
Apr8g1372 534 SMART PMEI_2 28 177 IPR006501 GO:0004857
Apr8g1372 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 180 IPR035513 -
Apr8g1372 534 SUPERFAMILY Pectin lyase-like 216 532 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1372 Apr-Chr8 21015627 21017615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1372 14 533 Carbohydrate Esterase AT1G02810 49.826 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1372 K01051 - gmx:100810329 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0687 4 5638286 5640501 Apr8g1372 8 21015627 21017615 PCT