Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1361 ATGGTAAGGGGAGGAAAGGTTAGTGGCAAACGCAATTTCAGAAAAAGCGTTCAGTCAAAGGAGGGTGGTTCTGATGATTCGGATGAGGACTATGTAGTTTCGGATGAGGGTAGAGAAGCATCTGACTATTATTGCTCCTCGTTAGATGGATGTACTTCAGAGGAGAGTATTGATAGTTTTATGGAGGAGGAGGAGGAGGAAGAAGAAGAATTTAAAGGATTGAGGAATGTCAATAGATCAAAGGCAAAAAAATCCAGTTCTGGTCGGCGGAAAAATGCAAGTAAAAAATCACGAAAGAGAGGAAAGATTACACATGCAGAGGAGGAGGAGGAGGAGGATGAGGAAATTCAAGAAAGGGGAAGGATAACACGTGCAGAACAACTAGAAGAAGAGGAGGAAGAGGAGTGGGAGGAGAAAGAGGAGGAGGAAGTGTGGGAGGAGAAGGAGGAGGAGTGGGAGCAGAAAGAGGAGGAGGAGGGGAAGGAGAAAGAGGAGGTGGAGTGGAAGGAGAGGAAGGAGAAAGAGGCGGTGGAGAAGGAGGAAGAAGAGAAGGTGGAGAGGGATGGAGATGAGGAAGAGGAGGAACAAGAAGAGGATGGAGATGGAGATGAAGAGGATGAGGATTTTGACTATGATGATGAGGATGATGAATTTACGCCAGAGGAAGAAGATTTTTCTGATGAGGAAGAAGAAATTAGAGGGGAGAAAAGGAAAAATAATGGCATGAGAGTGGACAAGAAGGTTTTGCAGAAAAGGACCTCTTCAGTTTCTACCAGAGGTCGAAAAAGGCGGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAACAAATTAAGAAAGAATGGGAAGTTAAAGAAGAAAGAAAGATGTGACGACGGAGGTGATTTTATAGATAATGGCCCAGCCATTAGGACAACTAGTTGGAAAAAACGAGGCCGGAAGAGGAGAAGGGTGCTTCTTTCAGATTCAGATTATGCATCTACTGGATCATCTGATTTTGAGTATACTATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGGAATTGTGCGGAGTTGTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAACAATGAAGAGGTTGGTGTCCATGAAGATCTACATCAGCAACGGAAGCCTCCTGGTCGGAAGGGTAAGGAAAAAATAGAAGAACCTCAGGGAAAAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAGGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTGTCGGAGGAAGATAAAAGAAGAGTAAGGGGAGTTCTAAACTGTTGCACTCACTACTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGATCAACAACAGGGATTGATTTAAGAGAAGTTATGATACAAGTCCCCGAACGTGACCAGGTTTATCAGCCCACTGAAGAAGAACTCAGGAGCTATATTGATCCATACGAGTATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTTCTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGACGGGAAGTTCCTGAAGGTAATTGGTATTGTGAAGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGCTCCCAAATTCAAGAAGGTGTGGCTGATTCAAGGGTGACAATCCAGAGCCTTCCTGTTAGATCACCTCCTGTTCTACATGTACGAGAAAGTATAGACCTAAACTTGATTTCTTCACCCCGCACAGTTTTTAATCAAGGATTAGGGCCTCTTTCATCTTCTAGATTTCCTGGCAGAAGTGTTGAAGGAGTTTCTCCTGTGTCTGGAGGGGCACCAACTTTATCAGGGAGACGCTGGATACACCGACAAATTCAACAGCTACTTTCAATGGATAGGATGACTTCTACAGCTGGAAGAAGTAATAGTATTTCAGCTACCACTTCAACTAGTAACTTCCATAGCTCTCAAATTGATCAAAGTAGGGAAACAGCCACTCAGCATACCAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGATGAAAGATTATGCAACAATAACTCTCCATTAATGCAGAATGGAACATTATGGCCTGAACTTACAGGGACCCCCCCTGTACCTGATTGTGAACAAGTCCATCAGTTCAGTAGATCAAACATTGTCACTGATGGTAGTTTATCCCCTGTTGTCAGAGAAGAGACGAACTTTCACATTGCTAAGGAGCAGTTGCAGTCAATGGTTAAAAGCCACCTGAAGAGCATGTCTCAAAATATTGATTTAGGCCACAATACATTCAAGGATGTTACAAGGAGTTCTATGCACACAATTCTAGCAGCTTGTGGTCTGGAGCACAAGAAGAGCGAAGTTTGCACTGTGCCAACCCCGTCTGTTTGTCCACACATTGAACTAATGGCTGGTGGGCAAACTAGTCTGATTAAAGGTTGCTGTTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATTTTGGACACAAGAATTTCGTCACAGTGGTTACGATTAGGTCTTTAG 2601 0.436 MVRGGKVSGKRNFRKSVQSKEGGSDDSDEDYVVSDEGREASDYYCSSLDGCTSEESIDSFMEEEEEEEEEFKGLRNVNRSKAKKSSSGRRKNASKKSRKRGKITHAEEEEEEDEEIQERGRITRAEQLEEEEEEEWEEKEEEEVWEEKEEEWEQKEEEEGKEKEEVEWKERKEKEAVEKEEEEKVERDGDEEEEEQEEDGDGDEEDEDFDYDDEDDEFTPEEEDFSDEEEEIRGEKRKNNGMRVDKKVLQKRTSSVSTRGRKRRSSRASKKPLRNKLRKNGKLKKKERCDDGGDFIDNGPAIRTTSWKKRGRKRRRVLLSDSDYASTGSSDFEYTISEEEREQVREAKELCGVVRNNLRSSSHLINNEEVGVHEDLHQQRKPPGRKGKEKIEEPQGKKGKEKVEDLKGEVGKQVCGICLSEEDKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVMIQVPERDQVYQPTEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCEGCRPVALGSSSSQIQEGVADSRVTIQSLPVRSPPVLHVRESIDLNLISSPRTVFNQGLGPLSSSRFPGRSVEGVSPVSGGAPTLSGRRWIHRQIQQLLSMDRMTSTAGRSNSISATTSTSNFHSSQIDQSRETATQHTRTQDVGTSYHTFFDERLCNNNSPLMQNGTLWPELTGTPPVPDCEQVHQFSRSNIVTDGSLSPVVREETNFHIAKEQLQSMVKSHLKSMSQNIDLGHNTFKDVTRSSMHTILAACGLEHKKSEVCTVPTPSVCPHIELMAGGQTSLIKGCCSSCFDSFVGDVVKRILDTRISSQWLRLGL* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1361 866 ProSiteProfiles Zinc finger PHD-type profile. 505 554 IPR019787 -
Apr8g1361 866 MobiDBLite consensus disorder prediction 78 100 - -
Apr8g1361 866 PANTHER F18C1.6 PROTEIN 126 855 - -
Apr8g1361 866 PANTHER F18C1.6 PROTEIN 1 135 - -
Apr8g1361 866 Pfam Ring finger domain 414 457 IPR001841 -
Apr8g1361 866 CDD RING-HC_Topors 415 457 - -
Apr8g1361 866 SMART PHD_3 507 552 IPR001965 -
Apr8g1361 866 MobiDBLite consensus disorder prediction 256 283 - -
Apr8g1361 866 MobiDBLite consensus disorder prediction 56 70 - -
Apr8g1361 866 MobiDBLite consensus disorder prediction 159 183 - -
Apr8g1361 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 555 IPR013083 -
Apr8g1361 866 SUPERFAMILY RING/U-box 414 463 - -
Apr8g1361 866 MobiDBLite consensus disorder prediction 368 402 - -
Apr8g1361 866 SMART ring_2 415 456 IPR001841 -
Apr8g1361 866 MobiDBLite consensus disorder prediction 651 690 - -
Apr8g1361 866 MobiDBLite consensus disorder prediction 230 252 - -
Apr8g1361 866 Coils Coil 57 77 - -
Apr8g1361 866 MobiDBLite consensus disorder prediction 184 229 - -
Apr8g1361 866 SUPERFAMILY FYVE/PHD zinc finger 477 553 IPR011011 -
Apr8g1361 866 ProSitePatterns Zinc finger RING-type signature. 434 443 IPR017907 -
Apr8g1361 866 Coils Coil 163 198 - -
Apr8g1361 866 Pfam PHD-finger 507 553 IPR019787 -
Apr8g1361 866 PANTHER F18C1.6 PROTEIN 1 135 - -
Apr8g1361 866 PANTHER F18C1.6 PROTEIN 126 855 - -
Apr8g1361 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 478 IPR013083 -
Apr8g1361 866 MobiDBLite consensus disorder prediction 1 314 - -
Apr8g1361 866 MobiDBLite consensus disorder prediction 128 158 - -
Apr8g1361 866 Coils Coil 122 148 - -
Apr8g1361 866 ProSiteProfiles Zinc finger RING-type profile. 415 457 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1361 Apr-Chr8 20815891 20820766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1361 399 460 C3H Transcription Factor Family AT2G39100 37.097 2.67e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr8g1361 PHD 4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1361 - - gmx:100797448 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1361 8 20815891 20820766 Apr8g1361 8 20815891 20820766 ECH