Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1358 ATGTCGTATCGACCAACCGGGAACTCCAGAACCGATGTTCGCCGGAACCGATACAAGGTGGCAGTAGATGCCGAAGAAGGTCGGAGACGGCGGGAGGACACCATGGTGGAGATCCGCAAGAATAGAAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGTCTTCAACCTCAGCAACAGATACCTTCATCCGGTCACTCTACTCTCGTAGAGAAGAAGTTGGAGCACCTACCGTCAATGGTTGCCGGTGTTTGGACTGATGATAATAACCTGCAGCTGGAGGCAACGACGCAGTTTCGGAAGCTACTTTCGATTGAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTAGTTTCTCGCTTTGTTGAGTTTCTGATGAGGGAAGACTTTCCACAGTTGCAGTTCGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCAATTTTCGTGAAGCTCCTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCCTTAGGTAACGTTGCTGGGGATTCTCCCAGATGCCGTGATCTTGTTCTCAGTCATGGTGCTTTGCTTCCTTTGTTGGCACAACTAAATGAGCATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGTAGGGGGAAGCCACAGCCTCCTTTTGATCAGCAAGTTAAGCCTGCACTTCCTGCTCTTGCCCGTCTTATCCATTCAAATGATGAGGAGGTATTGACTGATGCATGTTGGGCACTTTCATATCTTTCTGATGGAACAAATGATAAAATTCAATCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTTCTGCATCCTTCACCTTCAGTGCTGATTCCTGCTCTTCGGACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATTATCAACCATCAGGCTCTTCATTGCCTTCTGAATCTGTTGACTAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGCTGGACCATATCAAACATCACCGCTGGGAATAAACAACAGATTCAGGCTGCGATTGATGCTAATATAATTGGTCCTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCCATCTCAAATGCTACATCTGGTGGTTCTCATGAACAAATCAAGTACCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATTTAGGCAATACTGGTGACGTGAATCTATATGCTCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTACGAAAAGGCTGTGAAAATTCTTGAGACATACTGGTTAGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTGGCGCTGAAGCTCCTGCTGTGCCTTCCGGTGGATTTAACTTCAATTAG 1605 0.4548 MSYRPTGNSRTDVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQQIPSSGHSTLVEKKLEHLPSMVAGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQSVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALHCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAAIDANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGGAEAPAVPSGGFNFN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1358 534 PIRSF Importin_alpha 6 533 IPR024931 GO:0005737|GO:0006606|GO:0061608
Apr8g1358 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 320 360 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 244 274 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 406 443 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 362 401 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 278 316 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 150 189 IPR000225 GO:0005515
Apr8g1358 534 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Apr8g1358 534 Pfam Atypical Arm repeat 460 506 IPR032413 -
Apr8g1358 534 Gene3D - 13 52 IPR036975 GO:0006606
Apr8g1358 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Apr8g1358 534 MobiDBLite consensus disorder prediction 23 66 - -
Apr8g1358 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 246 288 IPR000225 GO:0005515
Apr8g1358 534 PANTHER IMPORTIN SUBUNIT ALPHA 4 524 - -
Apr8g1358 534 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Apr8g1358 534 PANTHER IMPORTIN ALPHA 4 524 - -
Apr8g1358 534 MobiDBLite consensus disorder prediction 23 52 - -
Apr8g1358 534 Gene3D - 75 499 IPR011989 -
Apr8g1358 534 Pfam Importin beta binding domain 14 97 IPR002652 GO:0006606|GO:0061608
Apr8g1358 534 SUPERFAMILY ARM repeat 9 503 IPR016024 -
Apr8g1358 534 SMART arm_5 236 275 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 405 445 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 150 190 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 107 148 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 191 233 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 277 317 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 362 402 IPR000225 GO:0005515
Apr8g1358 534 SMART arm_5 319 360 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1358 Apr-Chr8 20794752 20800334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1358 287 467 U-box Gene Family AT2G23140 25.275 3.37e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1358 K15042 - gmx:100797267 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2284 9 30568005 30572119 Apr8g1358 8 20794752 20800334 ECH
Apr1g2099 1 30531617 30536049 Apr8g1358 8 20794752 20800334 ECH
Apr8g1358 8 20794752 20800334 Apr8g1358 8 20794752 20800334 ECH
Apr4g0673 4 5536675 5542143 Apr8g1358 8 20794752 20800334 PCT