Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1354 ATGGCAAGCAGTAGCAGGAAGAAGAAGCACGATTTGGAGTTGGAAAGAGTTCGCTTAATCAGTTTAGCCCTTGATTTTGGATTCGACGAACACTCCGCTAACAAGTGCTTCGACCGTCTTCTCGCTCTCTACGGCGATGATGGTCGCGAATTCATCACCGTCGAACACTGCGGCGATGATTTTCTCGCCGCCTTGGCGGAGTCGATGCAAGCCACCGAGGAATGGGATGACCTACAGGAAATGGAGTCACAAGCGTGTGGAACCTTGACTCACATTTTCGACAAAACTGTTCCCACGTGTGGTGTTGCCAATGATGATGACACCTCAAGATGCTTCGTTAACATTGTCGACGATTCGCCTCAGCCTCAGAGACGCAAACACCAGACCAATGTGGTGGAGTTGGATTCCAGTGACGATGAGGATGTGCATTTCAGTGTTTCAAGGCAAAAATCTGTGGATTGCAGAAGTGGCATCACTCAAGGCTCAGTTTCATCAACTTCCAGCAAAATACGGTCCTCCTTTGCATCAAATAATAAAAACAGGACTCTCACTTACGAAGAATTGCAAGCACTAGTAGATGATATTGAGTTGGCAAATGTTGTTATCTTTGGTAATAAGGCATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCGGGTGTTACAGTAGTAGTATCTCCATTACTTTCACTCATTCAAGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAACTGCTTCCCAAGCCACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGCAATCAATCATTTCTTCAGATTCTAAAATGCATGCATCAGAAGGGACAGCTTGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAACATTTTCCAGATGTACCTGTCATGGCACTGACTGCCACTGCAACTCATGCAGTTCGTGAGGACATCTTAAATGCTTTAAGAATTCCCCATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTCATTGTTAAGACAAAGGAACCGCTAAAGCAGCTTGGACAGCTACTAATTGATCGCTTCAAGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTTTCAAAATTTTTGAATGAGAAGATCAAGATCAAGGCAATGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTAGCTGTTCAAAAGAAATGGCATGACGGGGAGGTCCATATAGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGGTTTGTCATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAGGAATCTGGAAGGGCTGGAAGAGATAATCTCCCTGCTGTTTGCATAGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTGAAGGTTGAATGCCGGAGACAGAATTTACTCGAACACTTTGGAGAATCTTTTGATAGAAAAGCCTGCAAATTTGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGCATTATGA 1830 0.4279 MASSSRKKKHDLELERVRLISLALDFGFDEHSANKCFDRLLALYGDDGREFITVEHCGDDFLAALAESMQATEEWDDLQEMESQACGTLTHIFDKTVPTCGVANDDDTSRCFVNIVDDSPQPQRRKHQTNVVELDSSDDEDVHFSVSRQKSVDCRSGITQGSVSSTSSKIRSSFASNNKNRTLTYEELQALVDDIELANVVIFGNKAFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLQILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPDVPVMALTATATHAVREDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLIDRFKNQCGIVYCLSKSECVEVSKFLNEKIKIKAMYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQQYCELKVECRRQNLLEHFGESFDRKACKFGSSPCDNCLKTAL* 610
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1354 609 PANTHER BLOOM SYNDROME PROTEIN 31 607 - -
Apr8g1354 609 Pfam RecQ zinc-binding 536 605 IPR032284 -
Apr8g1354 609 Gene3D - 400 608 IPR027417 -
Apr8g1354 609 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 202 607 IPR004589 GO:0004386|GO:0006310
Apr8g1354 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 545 IPR027417 -
Apr8g1354 609 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 331 340 IPR002464 -
Apr8g1354 609 Gene3D - 163 399 IPR027417 -
Apr8g1354 609 PANTHER DNA HELICASE RECQ FAMILY MEMBER 31 607 - -
Apr8g1354 609 SMART ultradead3 204 408 IPR014001 -
Apr8g1354 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 417 567 IPR001650 -
Apr8g1354 609 SMART helicmild6 442 524 IPR001650 -
Apr8g1354 609 CDD DEXHc_RecQ 202 399 - -
Apr8g1354 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 392 IPR014001 -
Apr8g1354 609 CDD SF2_C_RecQ 400 533 - -
Apr8g1354 609 Pfam DEAD/DEAH box helicase 210 378 IPR011545 GO:0003676|GO:0005524
Apr8g1354 609 Pfam Helicase conserved C-terminal domain 416 523 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Apr8g1354 Apr-Chr8 20677306 20681636 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1354 333 522 Eukaryotic Initiation Factors Gene Family AT5G11170 25.641 1.59e-08 55.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1354 K10899 - gmx:100806070 1068.14
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1354 8 20677306 20681636 Apr8g1354 8 20677306 20681636 ECH