Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1343 ATGGAAGATATTTACAAGTTGAACCCTCTTCTATCTTGTTCAGAGGATGTTGTTGTTAGAGATCATGTCAACGTTAACGCTTCTGCTACTGCTGCTTCTGAATTGCATCTAGGACTCGTTGCTAATAACTACCTTCGGATGGAAGAGCCATCCGAACCCGATGTGTCGGATCGACTGATCAAGACCCAGATCGCTTCTCACCCTCTTTATCCAAATCTAGTATCTGCTTATATAGAATGCCAAAAGGTTGGAGCACCACCAGAACTGGCTTCACTTCTCGAAGAAATAGCCCGTGAAAGCCACCCGACAGATGCTCTCCGTGAGATAGGAGATGATCCTGAGCTTGACGAGTTCATGGAATCATACTGTGAAGTTCTTCATAGATACAAGCAGGAGCTGTCCAAGCCATTCAATGAAGCGACTTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACGCTGACATTGTCATCGGATAACAATCGTTCAGATGAGGCAGCCGGGACATCAGAGGATGAATTAAGTTTTGAGAAGGTGGAAGCAATTGAAGGTCATGAATTTTCTGGCACACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTAAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGATCGTACTCATGGACTGGTGGAACACCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAATGACTGGACTGGATCAAAAACAGATCAATAACTGGTTCATCAATCAAAGGAAACGGCATTGGAAGCCATCTGAAGATATGCGATTTGCCATTATGGATGGGGTGAGTGGTGGTGGAATAGGAGGACCTATGTAA 918 0.4379 MEDIYKLNPLLSCSEDVVVRDHVNVNASATAASELHLGLVANNYLRMEEPSEPDVSDRLIKTQIASHPLYPNLVSAYIECQKVGAPPELASLLEEIARESHPTDALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTLSSDNNRSDEAAGTSEDELSFEKVEAIEGHEFSGTRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARIVLMDWWNTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGGGIGGPM* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1343 305 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Apr8g1343 305 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Apr8g1343 305 SMART HOX_1 223 288 IPR001356 GO:0003677
Apr8g1343 305 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Apr8g1343 305 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Apr8g1343 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 295 - -
Apr8g1343 305 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Apr8g1343 305 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Apr8g1343 305 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Apr8g1343 305 CDD homeodomain 237 285 IPR001356 GO:0003677
Apr8g1343 305 Gene3D - 219 292 - -
Apr8g1343 305 Pfam ELK domain 201 222 IPR005539 GO:0003677
Apr8g1343 305 SMART ELK_2 201 222 IPR005539 GO:0003677
Apr8g1343 305 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 295 - -
Apr8g1343 305 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Apr8g1343 305 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1343 Apr-Chr8 20506555 20511237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1343 54 298 Homeobox Transcription Factor Family AT1G23380 55.512 9.89e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr8g1343 KNOX2 9.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1343 - - gmx:102660463 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1343 8 20506555 20511237 Apr8g1343 8 20506555 20511237 ECH
Apr4g0660 4 5457305 5462420 Apr8g1343 8 20506555 20511237 PCT