Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1340 ATGGACTTTCAGGGATTCCTCAACGATTTGCAGGATTGGGAAGTTTCTAGAAAGGATAAAGCACGAACAACGAAGTCAAAAAATGGTTCATCTTCTCGACATACTGGATCAGTGGGTGTGGAGAAGGCATCAAGAGGGGATACTATTTCATCAGGGCAGTATGATTTCTCAAGAAATAACGATCCTTTCAATCGTGTCCGTAGTAGTTTTGTTCATGACGATGTTCCTGATGCTGCTTCTGAGAAAGACCTGGGTAATGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTATTGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGAGCAATGGCCTCTATCAAGCTCAGAAGATTCCAAGAAGCTGAGGATGACTGTACGGAGGCCTTAAACCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCGATGGAGGATGCTGAATTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGTTGATGCTAAATCTTTGTATGAGAAAAGATTAATGTTTTTGTCAAATGCGATTGTCCAGGATATTCTTCAGAAAGCATCTGGAGCTCTCAGAAGCGCTGTACAGGGAACACAAAAAATTGTAAAGTCAGAGTCAAAAGTTAATGGAGGCAACATCCACTCCATTTCACATGGTACTCAAAAGTCAGGGCCAGCTGAAGTTCATCATCATACAAAGGTTAATGAGCGGAAAATACCTGTTAAAGAATCATTCTTGATGGAGGAGATTGATAGCAGAGATACAAAAGCCAGAAGCAAGACTCAAAAACAAGAAGGCGATGGTTCTAAGCAAGATTTGAATCCAAGCAACAGTTTGGAGCAGAGAAATCAGAGAATTACTACACAGGAAACGAAAGCATCTGTTCAACAGCTTGCTTCTGATGCAGCTTCTCGAGCCATGGCTGAAGCTGCAAAAAACATGACACCACCAACTACAGCTTATCAATTTGAGGTCTCTTGGAAAGCATTTTCAGGTGATCTTGCATTGCAGGCTCGCCTATTAAAGGCCATATGTCCCCATGAATTACCAAAAATATTCAAAAATGCCTTATCTTCTACCATGCTAGTTGACATCATCAAGTGTCTTGCATCCTTTTTCACTGAAGACATGGATCTGGTTGTCAGTTATATGGAGCATCTGACCAAGGTACCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACAGATAAGGATGGCATACGAAAGATCTGGGATGAAGTGTTCTGTAGTGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTTCGATCAAAATTCTGCCGTATACAGTGA 1395 0.4079 MDFQGFLNDLQDWEVSRKDKARTTKSKNGSSSRHTGSVGVEKASRGDTISSGQYDFSRNNDPFNRVRSSFVHDDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMASIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYVDAKSLYEKRLMFLSNAIVQDILQKASGALRSAVQGTQKIVKSESKVNGGNIHSISHGTQKSGPAEVHHHTKVNERKIPVKESFLMEEIDSRDTKARSKTQKQEGDGSKQDLNPSNSLEQRNQRITTQETKASVQQLASDAASRAMAEAAKNMTPPTTAYQFEVSWKAFSGDLALQARLLKAICPHELPKIFKNALSSTMLVDIIKCLASFFTEDMDLVVSYMEHLTKVPRFDMIVMCLSSTDKDGIRKIWDEVFCSEATPMEYAEILDNLRSKFCRIQ* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1340 464 MobiDBLite consensus disorder prediction 17 56 - -
Apr8g1340 464 Pfam Tetratricopeptide repeat 113 141 IPR019734 GO:0005515
Apr8g1340 464 Gene3D Tetratricopeptide repeat domain 69 176 IPR011990 GO:0005515
Apr8g1340 464 SMART tpr_5 78 111 IPR019734 GO:0005515
Apr8g1340 464 SMART tpr_5 112 144 IPR019734 GO:0005515
Apr8g1340 464 SMART tpr_5 145 178 IPR019734 GO:0005515
Apr8g1340 464 MobiDBLite consensus disorder prediction 28 56 - -
Apr8g1340 464 PANTHER OS05G0129900 PROTEIN 1 462 - -
Apr8g1340 464 Pfam Potential Monad-binding region of RPAP3 340 429 IPR025986 -
Apr8g1340 464 ProSiteProfiles TPR repeat profile. 78 111 IPR019734 GO:0005515
Apr8g1340 464 SUPERFAMILY TPR-like 77 188 IPR011990 GO:0005515
Apr8g1340 464 MobiDBLite consensus disorder prediction 229 246 - -
Apr8g1340 464 Pfam Tetratricopeptide repeat 82 110 IPR001440 GO:0005515
Apr8g1340 464 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Apr8g1340 464 MobiDBLite consensus disorder prediction 229 302 - -
Apr8g1340 464 MobiDBLite consensus disorder prediction 248 291 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1340 82 148 U-box Gene Family AT3G07370 41.176 2.91e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1340 K23002 - gmx:100784528 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1340 8 20418773 20425372 Apr8g1340 8 20418773 20425372 ECH