Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1338 ATGGTTCCATCACCATCAAATGATGACTCGGACATCTTCTATCTCAAACTCACTGAGTTGTTGGAATCCTCTGGACTCACCCTAATTTTCAATGTCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTTGGAGGTGACCAAAAGAGGAGGATATCACCAGGTTGGCCGAGAAAAGAAATGGAGCGAAGTTGTCTCTGCTCTGAAATTGGAAGGAAATAATGTTAAGTTATGTGCTCAAATTGAAATGCTTTATGCTCATCTTCTTTACCAATTTGAGCAATTGTACTTCTACAGGAGTCCTACAAAACCTGCTGCTACTAGCAGCACCAAAGGTCTACTAAAGAGGAAGCATAATTCAACAGTTAGTTTATCTCAAATAAGGGATACTAAAGATGGTCAAGTGGTGACAAAAATGTCAAAGGATTGTTCTAGCCAAATGACAGGTGGTTCATGTGATTTAGAAGTGCTTATTATGCAATGCTTTATGTTCCAACTTAAAGCAAGGGCAGGGTTTGTAGAACGACCGGTGCTTTTAGCAATACCCTCGAATGACAAAGAAATGAAAAAACGCCGAGGTGCTCCACAAGGACAAAAGAATGCCTATCAAATTTTCATCAAGCAGGAATGTGCTCGATTGAGAACGCGTAATGAGGCCTCTGATGGCCACAGAATCCTACACATGGCTATTGATGCATGGAAGAAGATGTCTGAAATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAAAATTTAAGGAAGCGATGATCAGTCACAATAAACAGCAGAACATGCATGATACCAGGGAAGAGAAGAGGCCTAGTCTGTCTGATGATTACCATGTAACTTTGCAGCCAGAGGCAGATGACTCCTTTGTCAATAAAGCAGAAGTGGGATTAGCTCTTAAAATGACCGAAAAAACATCCAAGGAAACTTTATTTCTAATGGAATGGGATGCTGCTTGTTCATTAGATTTTCCAACTGAGGAATCCAAGGAACTCTACTAG 1017 0.4051 MVPSPSNDDSDIFYLKLTELLESSGLTLIFNVRETLLDLYLFYLEVTKRGGYHQVGREKKWSEVVSALKLEGNNVKLCAQIEMLYAHLLYQFEQLYFYRSPTKPAATSSTKGLLKRKHNSTVSLSQIRDTKDGQVVTKMSKDCSSQMTGGSCDLEVLIMQCFMFQLKARAGFVERPVLLAIPSNDKEMKKRRGAPQGQKNAYQIFIKQECARLRTRNEASDGHRILHMAIDAWKKMSEIEKQPYVEESKKNKEKFKEAMISHNKQQNMHDTREEKRPSLSDDYHVTLQPEADDSFVNKAEVGLALKMTEKTSKETLFLMEWDAACSLDFPTEESKELY* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1338 338 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 9 322 - -
Apr8g1338 338 Gene3D High mobility group box domain 191 283 IPR036910 -
Apr8g1338 338 Gene3D - 4 114 IPR036431 GO:0003677
Apr8g1338 338 CDD HMGB-UBF_HMG-box 195 259 - -
Apr8g1338 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 322 - -
Apr8g1338 338 SMART bright_3 8 98 IPR001606 GO:0003677
Apr8g1338 338 Pfam ARID/BRIGHT DNA binding domain 11 93 IPR001606 GO:0003677
Apr8g1338 338 SUPERFAMILY ARID-like 9 103 IPR036431 GO:0003677
Apr8g1338 338 Coils Coil 245 265 - -
Apr8g1338 338 SUPERFAMILY HMG-box 181 261 IPR036910 -
Apr8g1338 338 Pfam HMG-box domain 195 262 IPR009071 -
Apr8g1338 338 ProSiteProfiles ARID domain profile. 7 97 IPR001606 GO:0003677
Apr8g1338 338 SMART ARID_2 4 93 - -
Apr8g1338 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 195 263 IPR009071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1338 2 262 ARID Transcription Factor Family AT3G13350 25.000 2.28e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr8g1338 ARID 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1338 - - var:108325455 355.14