Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1320 ATGGGAAAGAGGAAGTATTACTGCGACTACTGCGACAAGCAATTCCAAGACACAGCTGCGGATCGGAAACGACACGTTCGTGGAATTCAACACCAGCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAACAACAAAACCCTATTTTTCCTAATTCTAAACAGCCCCTTTGCATTCACTTCCTCAACACGGGCTTTTGCCGTTACGGAGAGTCTTGCAAATATCTTCATCCCCAAATCATAAGCACAGCACCATCTCCATCTCCATCTCCAGGTCAATTCCTTCTCTCTCTATCATCCACTGCAGGGATAGAAAATCTTCCCCCTTCGTTGCAGCCTCCTCCTGAGGCTGGATATCCCCATCTTCCTTTTCTCGACTGGGGATTCAATTAG 390 0.4718 MGKRKYYCDYCDKQFQDTAADRKRHVRGIQHQQAKARWYDSFKQQNPIFPNSKQPLCIHFLNTGFCRYGESCKYLHPQIISTAPSPSPSPGQFLLSLSSTAGIENLPPSLQPPPEAGYPHLPFLDWGFN* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1320 129 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Apr8g1320 129 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Apr8g1320 129 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Apr8g1320 129 SUPERFAMILY beta-beta-alpha zinc fingers 4 50 IPR036236 -
Apr8g1320 129 Gene3D - 45 110 - -
Apr8g1320 129 Gene3D Classic Zinc Finger 4 44 - -
Apr8g1320 129 SUPERFAMILY CCCH zinc finger 50 77 IPR036855 GO:0046872
Apr8g1320 129 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 78 IPR000571 GO:0046872
Apr8g1320 129 PANTHER NUCLEASE-RELATED 1 127 - -
Apr8g1320 129 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1320 51 87 C3H Transcription Factor Family AT1G04990 51.351 6.45e-07 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g1320 zf-U1 9.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1320 K13152 - gmx:100527203 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1320 8 19720616 19721535 Apr8g1320 8 19720616 19721535 ECH