Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1319 ATGAATCTTGATAAGGAAATGGAAGCCACAGTCGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACGATTGGGGGTAGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAACGTGTTGTAGGGCATGGATCATTTGGAGTTGTGTTCCAGGCTAAATGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAAAGGTATAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGATCACCCGAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACCACTGAGAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGTGTGATCAAACATTACAACAAGCTGAACCAAAGGATGCCACTGATATATGTCAAACTCTATACATACCAGATCTTTAGGGCATTATCATATATTCATCGTTGTATTGGAGTCTGCCATCGAGATATCAAGCCTCAAAATCTACTGGTCAATCCACATACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATATCGTACATTTGTTCTAGGTATTATAGAGCACCTGAGCTTATATTTGGAGCTACTGAATATACTACAGCTATTGACATTTGGTCTGTTGGTTGTGTTCTAGCTGAGCTGCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATAAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACCTGCGGTGCACAGCTTTAGATGCGTTGACACATCCTTTCTTTGATGAGCTTCGTGACCCAAATACTCGCTTGCCAAATGGTCGTTTTCTTCCACCACTATTTAATTTCAAATCTCACGAACTGAAGGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCAAGGAAGCAATGTCCGTTTCTTGGCTTGTGA 1131 0.4182 MNLDKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1319 376 Gene3D Transferase(Phosphotransferase) domain 1 120 368 - -
Apr8g1319 376 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 4 374 - -
Apr8g1319 376 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1319 376 CDD STKc_GSK3 35 327 IPR039192 -
Apr8g1319 376 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 4 374 - -
Apr8g1319 376 Gene3D Phosphorylase Kinase; domain 1 24 119 - -
Apr8g1319 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Apr8g1319 376 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Apr8g1319 376 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1319 376 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1319 376 SUPERFAMILY Protein kinase-like (PK-like) 39 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1319 Apr-Chr8 19691268 19698300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1319 46 352 MAP Kinase Gene Family AT2G43790 35.110 2.66e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Apr8g1319 Pkinase 3.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1319 K00924 - gmx:100780226 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1319 8 19691268 19698300 Apr8g1319 8 19691268 19698300 ECH