Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1317 ATGGACGAGACAAAAAACATAAGAAACATATGCATACTGGCACACGTGGACCACGGCAAAACAACGTTGGCCGACCACCTGATCGCGGCGGCTGGCGGCGGCGTGGTCCACCCGAAGCTAGCGGGTCGGGTCAGGTACATGGACTATCTGGACGAGGAGCAACGCAGAGCCATCACAATGAAGTGCTCCTCCATCCTCCTCTGCTACAACCCCCACTCCATCAACCTCATCGACTCACCCGGCCACGTTGACTTCTGCAGCGAGGTATCCAGTGCCGCCCGGCTCTGCGACGGCGCTCTCCTCCTCGTGGATGCCGTGGAGGGCGTCCACATCCAAACCCGCGCCGTCCTCCGCCAATGCTGGATTGAACGCCTCACCCCTTCCCTCGTCATCAACAAAATCGATCGCCTAATCACCGAGTTGAAGCTCTCTCCCTCCGAAGCCTACACTCGTCTCTCGCGTATCGTTCATGAAGTTAACTGCATCTTTAGTGCCTTCAAGTCTCAGAAATATTTATCTGACGTGGACATGGGCTCTCATTTAGACGACAACGAGGAGGATGCGTTTCAGCCGCAAAAAGGGAATGTCGTTTTTGCTTGTGCTTTGGATGGTTGGGGTTTTGGTATTAATGAGTTTGCTGAGATATATGCGTCAAAGCTTGGTGCAAGTGTGAACGCCTTGCGGAGAGCGTTGTGGGGTCCATGGTATTTTAATCCCAAGACTAAGATGATTGTTGGCAAGAAAGGGATTTGTGGTGCTATGGACAAGGATAAGACTATGTTTGTTCAGTTTGTTTTGGAGCCATTGTGGCAAGTGTATCAGGGAGCTTTACAAGGGGATAGAGGGTTGCTTGAGAAAGTTATTAGGTCGTTTAATTTGTCTGTTCCCGCGCGAGAATTGAAGAATAAGGATGCTAAAGTGGTGCTTCAGGCGGTTATGAGCTGCTGGCTTAAGCTTTCGGATACTGTTTTGTCTATGGTTGTTAGGTTTATGCCTGACCCTGTGATGGCACAGTCGTTTCGTATATCCAGGCTCATTCCAAAGAAGTGGGAGGAGGAGGCGGCGGTGAGGAAAGCGGTGGAGGTGTGTGATTGTAGGCCTCATGTTCCTTGTGTTGCTTTCGTGTCGAAGATGTTGGTTGTCCCTGTTAAGATGCTTCCTCCTGGTTATGAAGATGAGGAGGAGGAGTTGGATGAATGTTTCTTGGCATTTACTAGGGTCTTTAGCGGGGTTTTGTCCGCAGGGCAGAGAGTTTATGTTCTTTCTGCTCTGTATGATCCTCTAAAAGGGGAAACAAAGCATATACAGGAGGCTGAATTGAAATCGCTGTATTTGATGATGGGCCAAGGGTTTAAAGAAGTGTCATCTGCTAAAGCAGGAAATATTGTTGCTATCCGAGGCCTTGGCCAGCATATATATAAGACTGCTACCCTTTCCTCTACTAAGAACTGTTGCCCTTTTTCGAGTATGGCTTTCCAAGTTGCCCCGGCTTTGAGAGTTGCAATTGAGCCATCTGAGCCTGCGGATGTGGCCGCACTGCACAAAGGCTTGGAGCTTCTGAATATAGCAGATCCATTTGTTGAGGTCACATTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCTGCTGGCCAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCGAAAGTAAGCTTGCAAGTCTCTCCGCCTCTTGTGTCCTACAAAGAGACCATTGAGGGAGATGTTTCCAATGTGCTGGAAGATTTTAACTTTCTAAGTAGGATATCAGGTTATGTGGAAAAGACAACATCCAATGGAAGATGTGTTGTTCGGGTGAAAGTGATGAAACTTCTACCTTCTGTTGTAAAGGTGCTCCATGAAAACTCTGATTTACTTGCAGATATCATTGGAATGAAGTCAGGGAAGACAGTAAAACGTTTGGAAATACAGGGACCCAGTATTCTTGAAAATGACAAGCCAGCTGAAGCGCTGAAAAAACGCATATTGGATGCAGTGGAGAGTGATATTTTGAGCAGGAATGAAAATGACAAGGACTATGCCGAGAAATGTAAATTGACGTGGCTTAAGATACTGAGGAGAATATGGGCACTTGGACCAAGCCATATTGGTCCTAACATTCTCTTTACTCCTGATATTAACGCAGAAAACACTGATAGCTCTGTTCTAATACGTGGTTGTTCTCGTCTATCTGAAAGGATGGGCTTTGTAGATTCTAGTATCAGTGATTCCATTGCTGAGACATCTTCAAATGTGGATGCTGAGCACCTTGAGGATAGTGTTATAGCTGGGTTCCAAAATGCTACCTCAGCTGGACCATTGTGTGATGAACCTATTTATGGTTTGGCATTTATCATTGAGGCACGCATATCTCCACTTTCAAAGCATCAAGAAGAATCTGAAACACACCAACAATCCCAGCAGAGTGGCACCTTTGCAGGGGAGGTTATGGGAGCTGTAAAAGATGCTTGTAAAGCAGCTGTGCTTCAGAATAAGCCTCGCCTTGTGGAAGCATTGTACTTTTGTGAATTGAATACTACTACTGAATATTTAGGTCCCATGTATGCTGTACTTGCCCGAAGACGAGCACGAGTTTTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTTACTGTGCATGCATATGTTCCTGCTTCTGAGAGCTTTGGTTTTGCAGATGAGCTTAGAAGGTGCACTTCTGGTGCAGCAAGTGCACTTCTTGTACTTAGCCACTGGGAAGCACTTACAGAGGATCCTTTCTTTGTACCTAAAACAGCGGAGGAAATTGAAGAGTTTGGAGATGGCTCTAGTGTTCTTCCAAATACAGCAAGAAAGTTAATTGATGCAGTTAGACGGCGTAAAGGCCTTCCTGTGGAGGAAAAGGTTGTGCAGCATGGAACCAAGCAACGGACACTGGCTCGTAAAGTCTGA 2943 0.4655 MDETKNIRNICILAHVDHGKTTLADHLIAAAGGGVVHPKLAGRVRYMDYLDEEQRRAITMKCSSILLCYNPHSINLIDSPGHVDFCSEVSSAARLCDGALLLVDAVEGVHIQTRAVLRQCWIERLTPSLVINKIDRLITELKLSPSEAYTRLSRIVHEVNCIFSAFKSQKYLSDVDMGSHLDDNEEDAFQPQKGNVVFACALDGWGFGINEFAEIYASKLGASVNALRRALWGPWYFNPKTKMIVGKKGICGAMDKDKTMFVQFVLEPLWQVYQGALQGDRGLLEKVIRSFNLSVPARELKNKDAKVVLQAVMSCWLKLSDTVLSMVVRFMPDPVMAQSFRISRLIPKKWEEEAAVRKAVEVCDCRPHVPCVAFVSKMLVVPVKMLPPGYEDEEEELDECFLAFTRVFSGVLSAGQRVYVLSALYDPLKGETKHIQEAELKSLYLMMGQGFKEVSSAKAGNIVAIRGLGQHIYKTATLSSTKNCCPFSSMAFQVAPALRVAIEPSEPADVAALHKGLELLNIADPFVEVTFSARGEHVLAAAGQVHLERCIKDLKERFAKVSLQVSPPLVSYKETIEGDVSNVLEDFNFLSRISGYVEKTTSNGRCVVRVKVMKLLPSVVKVLHENSDLLADIIGMKSGKTVKRLEIQGPSILENDKPAEALKKRILDAVESDILSRNENDKDYAEKCKLTWLKILRRIWALGPSHIGPNILFTPDINAENTDSSVLIRGCSRLSERMGFVDSSISDSIAETSSNVDAEHLEDSVIAGFQNATSAGPLCDEPIYGLAFIIEARISPLSKHQEESETHQQSQQSGTFAGEVMGAVKDACKAAVLQNKPRLVEALYFCELNTTTEYLGPMYAVLARRRARVLKEEMQEGSPFFTVHAYVPASESFGFADELRRCTSGAASALLVLSHWEALTEDPFFVPKTAEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTLARKV* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1317 980 SUPERFAMILY EF-G C-terminal domain-like 494 568 IPR035647 -
Apr8g1317 980 TIGRFAM small_GTP: small GTP-binding protein domain 7 138 IPR005225 GO:0005525
Apr8g1317 980 SUPERFAMILY Ribosomal protein S5 domain 2-like 570 840 IPR020568 -
Apr8g1317 980 Gene3D Translation factors 334 493 - -
Apr8g1317 980 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 224 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 SMART EFG_C_a 838 927 IPR000640 -
Apr8g1317 980 Gene3D Elongation Factor G (Translational Gtpase), domain 3 496 571 - -
Apr8g1317 980 Gene3D - 1 211 IPR027417 -
Apr8g1317 980 CDD EF2_II 370 481 - -
Apr8g1317 980 Pfam Elongation factor G C-terminus 839 923 IPR000640 -
Apr8g1317 980 CDD EF2 8 217 - -
Apr8g1317 980 Gene3D - 837 971 - -
Apr8g1317 980 PANTHER ELONGATION FACTOR-LIKE GTPASE 1 5 979 - -
Apr8g1317 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 332 IPR027417 -
Apr8g1317 980 CDD aeEF2_snRNP_like_IV 567 845 - -
Apr8g1317 980 Gene3D - 593 835 IPR014721 -
Apr8g1317 980 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 979 - -
Apr8g1317 980 SUPERFAMILY EF-G C-terminal domain-like 841 939 IPR035647 -
Apr8g1317 980 SUPERFAMILY Translation proteins 356 490 IPR009000 -
Apr8g1317 980 Gene3D Yeast translation eEF2 (G' domain) 212 317 - -
Apr8g1317 980 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 PRINTS GTP-binding elongation factor signature 55 63 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 PRINTS GTP-binding elongation factor signature 75 85 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 PRINTS GTP-binding elongation factor signature 91 102 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 PRINTS GTP-binding elongation factor signature 127 136 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 Pfam Elongation factor Tu GTP binding domain 5 282 IPR000795 GO:0003924|GO:0005525
Apr8g1317 980 Pfam Elongation factor Tu domain 2 402 478 IPR004161 GO:0005525
Apr8g1317 980 CDD eEF2_snRNP_like_C 841 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1317 Apr-Chr8 19621869 19625592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1317 1 980 Eukaryotic Initiation Factors Gene Family AT3G22980 65.073 0.0 1316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1317 K14536 - pvu:PHAVU_003G003900g 1497.26