Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1306 ATGACAAGGAAAAAGGTGAAACTTACCTATATCATCAACGACATGTCAAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTAAGTGAACTGACAATTCTGTGTGGGATTGAGGCTTGTGCTATAATTTCCAGTCCTTTTGATTCCAAGGCAGAGGTTTGGCCAGATCCAAAGGGAGCCAAGCAAGTGATTGAGAGGTATCAGAATGCATCTGTGATTGATGAAAGCAAGAATGTGAACCAAGAGAGCTTCATCATGCAGAGGATTGCCAAAGCCCAGGAGCAGGCAAAGAAGCAGCGTGAGGAGAACTGTGAGAGGGAGATGACCCTATCTATGTTCCACTATGCAAAAATCAAAATGCTGCCAAAACACCTCACCATTGAAGAACTGAAAGATCTTGACAAGCTCATTGAGAAGAATATGAACGACATTCAAAATAAGATGGCTGAGCTCAGTACAGTCAGTTGA 480 0.4208 MTRKKVKLTYIINDMSRKATFKKRKKGIIKKVSELTILCGIEACAIISSPFDSKAEVWPDPKGAKQVIERYQNASVIDESKNVNQESFIMQRIAKAQEQAKKQREENCEREMTLSMFHYAKIKMLPKHLTIEELKDLDKLIEKNMNDIQNKMAELSTVS* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1306 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr8g1306 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr8g1306 159 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr8g1306 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr8g1306 159 Coils Coil 131 154 - -
Apr8g1306 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Apr8g1306 159 Coils Coil 86 106 - -
Apr8g1306 159 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Apr8g1306 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Apr8g1306 159 PANTHER MADS BOX PROTEIN 2 155 - -
Apr8g1306 159 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Apr8g1306 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1306 Apr-Chr8 19451075 19451554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1306 1 152 Type I MADS-box Gene Family AT5G48670 50.980 3.38e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr8g1306 SRF-TF 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1306 - - gmx:100792290 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1306 8 19451075 19451554 Apr8g1306 8 19451075 19451554 ECH