Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1305 ATGACTAGGAAGAAGGTGAAACTTGCGTATATCACTGATGATGCAACAAGGAAAGCAACATTCAAGAAGAGGAAGAAGGGTATCATTAAGAAGGTGAATGAACTCACAATTTTGTGTGGGATTCAAGCATGTGCCCTAATTCCAAGTCCTTTTGATTCCAAGACTGAGGTTTGGCCTGACCCAGAAGGAGCCAAAAATGTGATTGAGAGGTATCAGAATACACCTATGATAGATGAACGAAAGAACGTGAACCAAGAAAGATTCGTCATGCAATGGGTCGCCAAAACCCAAGACCAATTGAAGAAAAAGCGTCAAGAAAATCGTGAGAAGGAGATGACCCTTTCTATGTTCCAGTACATGCATGGAGAAACGCTGCCACAACACTTCACTGTTGAAGAACTCAAATGTCTTGACAACGTTATCGACAAGAATATGAAGGAGATTGAAAATAAGATTGCTGCCCTCACTTGA 471 0.4119 MTRKKVKLAYITDDATRKATFKKRKKGIIKKVNELTILCGIQACALIPSPFDSKTEVWPDPEGAKNVIERYQNTPMIDERKNVNQERFVMQWVAKTQDQLKKKRQENREKEMTLSMFQYMHGETLPQHFTVEELKCLDNVIDKNMKEIENKIAALT* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1305 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr8g1305 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr8g1305 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Apr8g1305 156 Coils Coil 93 113 - -
Apr8g1305 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Apr8g1305 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr8g1305 156 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Apr8g1305 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Apr8g1305 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr8g1305 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Apr8g1305 156 PANTHER MADS BOX PROTEIN 2 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1305 Apr-Chr8 19442428 19442898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1305 1 155 Type I MADS-box Gene Family AT5G48670 46.795 4.13e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr8g1305 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1305 - - gmx:100792290 206.453