Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1304 ATGAAAGTCAATTTGATCCAACGATGGCATGCTGTTGCTTCATGGACATGGGATGCCCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGCAAACTCCCAGGGGATGACTGCCCTCTGATTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATGA 258 0.4767 MKVNLIQRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1304 85 CDD RING-H2_APC11 21 83 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Apr8g1304 85 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 85 IPR013083 -
Apr8g1304 85 ProSiteProfiles Zinc finger RING-type profile. 35 78 IPR001841 -
Apr8g1304 85 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 84 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Apr8g1304 85 SUPERFAMILY RING/U-box 6 84 - -
Apr8g1304 85 PANTHER RING BOX 6 84 - -
Apr8g1304 85 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 6 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1304 Apr-Chr8 19422280 19424466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1304 35 78 C3H Transcription Factor Family AT1G72220 41.304 9.68e-07 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1304 K03358 - egr:104424946 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1304 8 19422280 19424466 Apr8g1304 8 19422280 19424466 ECH