Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1302 ATGCCTTTGTATGAGTTATACCGTTTGGCTGGAGAGAAGCTTGGTAAAGAGACTAACAGCACACGTGCACCTGATCAATCTTCCTCGCCTGAGAATGATTTTTTCGAGTTGGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCTAGTAGAGTTAGAAAGAGTCCATCTTGCAGGAGTTTGCCCTCTCACTGCTTACCATCTCACAGTCCCAAAGGTAGAGATAAAGAGGTAGGATATGGTATCAACACAAGGATGGGAAAGCTTGAGGATTTAGACACTGGATTGAATGAAATTCCAATGTCAGTGCCGTCCCGTGAAGTGGATTTGAGTCAAGATGAAGATGTGTTACCTTGGTTGGATTATACGATGGATGGTTCTTTGCAACATGAATATGGTTCTGATTTCTTACATGAATTATCTGATGTCACAGAAAATAATCTTCCTGCCTCGAATAATTTTACACTATTGGATAAAAGAGGCAATGGCAATATGTTATTTAGGGACTCTCATAAAATTTCTGCAGAACAAGGGAATGTTTCCAAGGGTTCTTCAGCTGAACTGGTTGAGAGTGCTAGACCTAAAGCTAGTACCAGTCAGTTATACCCCCCATCATCGCATCAATGTCAAACATCATTGGTATCTGCTAGATCAAGGGCATCAGATATAACTGAAAATAATAACAAAAGTAATGCAAACCAGGATGTGCAGTATGGCGAAATTGCTCAGGTTCTATCTTCCTCAAGTGATTTTTCGGGCTCAAAGATGCAGAAGAAAGATCCACCTATGCCTAGCAATGGTTCCAGTTCCTCCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATTGTGAGAGCTAATCTTCAGAACATTGGCTCGAAGTCTGGTTTGTGTTCGGCAAGATCAGACGGTATGGGAATTAAGAATAAAGGTGCTGCTGCAAGTAGCAGCAATCCTCCCGAGTCAATTCTTGTTGATTCAGGTGGTGAATGTCCAAAGGAACCAACCATGCACTGCCAGCAGGTTGTGGAGCAATCCAAGGCTGATTTGAAATCTTTGCAGCCAAACTCTGTCGAACAGAATGCTCTGCCTTCTAAGCAGTTGGAGGCTGCTTGCAAAGAGAGTGCCACTAACATTGATCAGACCCCCAATCAAGTTCTTGGTGACTGTAGCACTAAAGGACAGACAGCTGCGGAAAAGAGTATGGAGCCAGCCGTAGCCTCTTCCTCTGTTTGTTCTGGCAACGGTACAGACAGAGGCTCTGATGAGCCAAATCAAAGTTTGAAGAGAAAAAGTAAAGACACTGAGGACTCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATCAGTGGGTGTTAAGAAAGCAGCTGCTGGACGAGGAGGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGAACTCATACCAAATTGCAATAAGGTTGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCGGGAATGCAGCACATGCATGCGCCACATATGGTTCCATTCTCACCTATGGGTGTGGGCATGCATATGGGATTTGGTATGGGTTATGGGATGGGCATGCCTGACATGAGTGGTGGATCTTCTAGATTCCCTATGATTCAGATGCCCCAAATGCAAGGAACTCATATCCCTGTTGCCCATATGTCTGGACCCACTGCTTTACATGGGATGGCCAGATCAAGTTCCTCAGGGTTTGGGCTTCCAGGGCAGGGACATCCCATGCCAATGCCGCGTGCTCCTACATTTCCTTTTTCAGGTGGGCCTCTCATGAACTCATCAGGTCTGGGACTCCATGCCTGTGGATCATCAGGACATGTTGAAACTGTAGATTCGGCTTCAGCATCTGGCCTAAAGGATCAAATGCCAAATGTGGACCCACAAGTCAAGCAAAGCACTGGTGGCTGTGACTTAACTAGTCAGATACCTACCCAGTGTGAAGCAGCAGCTGTAGGATTTGAACAATCAGCTTTGGTGCGTAGTAGTGGTCATGCTCATTCCTCTGAGGCTAATGACAGTGGAGCTGTCAATCCTGGCAAAGAAGACGACCTTGTGCTTGGTTATGATTGA 2226 0.4506 MPLYELYRLAGEKLGKETNSTRAPDQSSSPENDFFELVWENGQISSQGQSSRVRKSPSCRSLPSHCLPSHSPKGRDKEVGYGINTRMGKLEDLDTGLNEIPMSVPSREVDLSQDEDVLPWLDYTMDGSLQHEYGSDFLHELSDVTENNLPASNNFTLLDKRGNGNMLFRDSHKISAEQGNVSKGSSAELVESARPKASTSQLYPPSSHQCQTSLVSARSRASDITENNNKSNANQDVQYGEIAQVLSSSSDFSGSKMQKKDPPMPSNGSSSSIMNFSHFARPAAIVRANLQNIGSKSGLCSARSDGMGIKNKGAAASSSNPPESILVDSGGECPKEPTMHCQQVVEQSKADLKSLQPNSVEQNALPSKQLEAACKESATNIDQTPNQVLGDCSTKGQTAAEKSMEPAVASSSVCSGNGTDRGSDEPNQSLKRKSKDTEDSECHSEDVEEESVGVKKAAAGRGGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMVPFSPMGVGMHMGFGMGYGMGMPDMSGGSSRFPMIQMPQMQGTHIPVAHMSGPTALHGMARSSSSGFGLPGQGHPMPMPRAPTFPFSGGPLMNSSGLGLHACGSSGHVETVDSASASGLKDQMPNVDPQVKQSTGGCDLTSQIPTQCEAAAVGFEQSALVRSSGHAHSSEANDSGAVNPGKEDDLVLGYD* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1302 741 MobiDBLite consensus disorder prediction 44 65 - -
Apr8g1302 741 MobiDBLite consensus disorder prediction 249 270 - -
Apr8g1302 741 PANTHER TRANSCRIPTION FACTOR PIF3 1 693 - -
Apr8g1302 741 MobiDBLite consensus disorder prediction 712 726 - -
Apr8g1302 741 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Apr8g1302 741 MobiDBLite consensus disorder prediction 425 455 - -
Apr8g1302 741 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 530 IPR036638 GO:0046983
Apr8g1302 741 Gene3D - 465 528 IPR036638 GO:0046983
Apr8g1302 741 MobiDBLite consensus disorder prediction 44 80 - -
Apr8g1302 741 CDD bHLH_AtPIF_like 470 532 - -
Apr8g1302 741 MobiDBLite consensus disorder prediction 311 337 - -
Apr8g1302 741 PANTHER TRANSCRIPTION FACTOR PIF3 1 693 IPR044273 GO:0003700|GO:0006355
Apr8g1302 741 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Apr8g1302 741 MobiDBLite consensus disorder prediction 400 424 - -
Apr8g1302 741 MobiDBLite consensus disorder prediction 400 483 - -
Apr8g1302 741 SMART finulus 476 525 IPR011598 GO:0046983
Apr8g1302 741 MobiDBLite consensus disorder prediction 12 32 - -
Apr8g1302 741 MobiDBLite consensus disorder prediction 710 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1302 Apr-Chr8 19399880 19405237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1302 1 619 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.365 8.61e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1302 HLH 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1302 K12126 - gmx:100794974 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1302 8 19399880 19405237 Apr8g1302 8 19399880 19405237 ECH