LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g1297	ATGCTCTCAAACCATTTGTGTCTGCTTCTTTATTTGTTCCTTCTGCCTTTCACCTTGTTACCCGGCGTGCAGTGCCAGCAGGGAAGTGACTTCGATAACCCCCTTGTTCTGCCACGTGTCACCCATCTCGTGTATGCTCAAATCTCCAACTTGACCTCTCTTCTCAATAACCAAATCAACGCTCGCTCCAGTTTTTGCGTCAAAGATCCGGATGCTGATTGGAATAAAGCATTTAATTTTTCATCTGATTTGGGCTTTGTATCTTCTTGCATTCTGAAGACTGAAGGAGACATTACTCAACGTTTGTGTACAGCAGCAGAAGTGAAGTTTTACTTAAGTAATTTATTGGAAAGATCTACAAGTGCCAACTATTTAAAGCCTAACAAAAACTGCAATTTAACCTCATGGGTCTCTGGTTGTGAGCCGGGATGGGCCTGTCGTGTTCACCAAAGCCAGCAAGTTGACCTTAGAAATTCACAAGAGATACCTGCCAGAACTACAAACTGTCAGTCATGTTGTGAGGGGTTCTTCTGTCCTCATGGCATCACATGCATGATACCTTGCCCTCTAGGTTCCTATTGCCCTCTCGCTACACTCAATAATGCAACTGGTGTATGTGAACCATATCTTTATCAACTGCCTCCATTGCAGCCAAATCATACCTGTGGAGGAGCTAATATTTGGGCTGATGTTAGTAGCAGTAGCGAGATATTTTGTTCGGCCGGATCGTATTGCTCCACCACTATCAAAAGAATCCCTTGCAGTAGTGGGCATTACTGCAGGATGGGTTCTACATCTGAGACAAGATGCTTCAAGTTGAGTTCATGTAATTCAAGCACTGTGACCCAAAATGTGCATGCATATGGAATTATGCTCATTGCTGCTTTGAGTACTTTGCTACTCATTATCTACAGCTGTTCTGACCAAGTTCTTGCTATCAGGGAAAGGAGAATGACTAAGTCTAGAGAAGCAGCAGCCAGAAGTGTAAGGAAGACTGCAAATGCACGCCAAAGATGGAAAGCTGCAAAAGATGCTGCTAAGAAGGGTGCAAGTGGACTGCAAGCTCAACTATCACAAACATTTTCTCGTTCAAAGGACTTGGTAGACCCTGAAGAAGTTAAAATTTTGAATCAAGCAACTACAGAGGCAGATATTGAATTGTTTTCAAATTCACATCCTATTAGCTCAACCATGGTTGCTAGTTCATCCGCAGTGCCAAAGGAGAAGGGAAAAGGACCCAGTGATCTGATTCAGATGATACATGAAACAGAAAATGATCGAGTTGTTAGTAACAACATTCATGTTGAAATAGAAAATAGCGATAAAAATGTTGCAGCACCTAAGGAAAAACAACTGCATACACATAGCCAAATTTTTAAGTATGCATATGCTCAACTTGAGATAGAGAAGGCTCAGCAGCAAGAAAACAAGAACCTTACCTTCTCAGGAGTAATTAGTATGGCTACCAAAAGTCAACAAAAAAGTAAAAGGCCTTTAATTGAAATATCTTTCAAGGATCTAACTCTCACTTTGAAAGCACACAATAAAGATATATTGAGATGTGTTACAGGTAAAATTAAACCTGGCTGCATCACTGCTGTCATGGGTCCATCAGGTGCTGGCAAGACAACATTTCTTTCAGCTATAGCTGGGAAGGCATTTGGATGCAAGGTGACTGGTTCCATTTTTATAAATGGAAAGAATGAATCAATTCACTCCTTTAAGAGAATTATTGGCTTTGTGCCACAAGATGATATAGTTCATGGAAACCTTACAGTGGAAGAAAACTTCCGGTTCAGTGCACAGTGCAGGCTACCTGCTGACTTGCCAAAACCAGACAAAGTTCTGATTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAGTCTGTGCGGAATTCTTTGGTTGGAACTGTAGAAAAGCGAGGGATCTCTGGAGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAGATGGTCATGGAACCTTCACTCTTGATCTTGGATGAACCCACATCTGGGTTGGATAGTGCATCATCTCAACTCCTTCTTAGAGCACTAAGACGTGAGGCTCTTGAAGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTGTTTAAGATGTTTGATGACTTGATACTCCTGGCAAAAGGTGGTGTTACTGTATATCATGGATCAGTCCAGAAAGTTGAAGAATACTTTGCAGGCCTTGGGATAACTATCCCAAAGCGCATTAATCCTCCAGATTACTTCATTGACATTTTGGAGGGCATTGCAATGCCGAGTGGAAGTTCAGGAGTGAGTTATAAAGAGCTGCCAGTTAGATGGATGCTTCATAATGGATACCCTGTACCTCTTGATATGCAGAAGAATTCTGCACAATATGATACATACGTAGCTACAAACCAAGTAAAAGAAATGGATGTTGATGGCTCTAGCCATGAAGAAAGAAGCTTTGTTGGAGAATTATGCCAAGATGTAAGAAATGTTATGGAATTAAAGGGGGAGAAAATAAGACTCAATTTTTTAAAATCAAATGATTTATCTGACCGTAAAACTCCTGGTATATTCAAGCAATACAAGTACTTCCTGATACGGGTCGGGAAGCAGCAATTACGAGAAGCAAAGATCCAAGCTATAGATTATTTAATATTATTACTTGCTGGAGCCTGCTTAGGATCACTTTCAAAGGCAAGTGATCAGACCTTCGGTGCAGCTGGATACACCTATACGGTGATTGCTGTATCTCTTTTATGCAAAATTGCCGCCTTGAGATCATTTTCTCTTGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGTAGCTTGGCTTATTTTCTCTCTAAAGACACAATGGATCAATTTAATTCAGTGGTCAAACCTGTGGTGTACCTCTCTATGTTCTATTTCTTTACATATCCAAGATCAACTTTTGCAGATAATTACATAGTGCTGCTTTGTCTTGTATACTGTGTGACTGGCATTGCATATGCATTAGCCATATTCTTTGAACCTGGTGCAGCACAGCTATGGTCAGTACTTCTACCGGTTGTTTTGACACTTATTGCAACACAACCAAAAGACAGTAAATTTTTGAAGGGTATAGCTAATTTATGCTATTCTAAGTGGGCATTAGAAGCATTCATAATTGCAAATGCTGAAAGGTATGATGGAGTGTGGCTCCTAACTCGTTGTGGTTCACTAATGAAAAGTGGCTATAATCTTCATGATTGGAGTTTGTGCATATCCATCCTCATTCTTATGGGGGTAATTGCTCGGGCAGTAGCATTTTTCTGTATGCTTACTTTTCAAAAGAAGTAA	3330	0.4069	MLSNHLCLLLYLFLLPFTLLPGVQCQQGSDFDNPLVLPRVTHLVYAQISNLTSLLNNQINARSSFCVKDPDADWNKAFNFSSDLGFVSSCILKTEGDITQRLCTAAEVKFYLSNLLERSTSANYLKPNKNCNLTSWVSGCEPGWACRVHQSQQVDLRNSQEIPARTTNCQSCCEGFFCPHGITCMIPCPLGSYCPLATLNNATGVCEPYLYQLPPLQPNHTCGGANIWADVSSSSEIFCSAGSYCSTTIKRIPCSSGHYCRMGSTSETRCFKLSSCNSSTVTQNVHAYGIMLIAALSTLLLIIYSCSDQVLAIRERRMTKSREAAARSVRKTANARQRWKAAKDAAKKGASGLQAQLSQTFSRSKDLVDPEEVKILNQATTEADIELFSNSHPISSTMVASSSAVPKEKGKGPSDLIQMIHETENDRVVSNNIHVEIENSDKNVAAPKEKQLHTHSQIFKYAYAQLEIEKAQQQENKNLTFSGVISMATKSQQKSKRPLIEISFKDLTLTLKAHNKDILRCVTGKIKPGCITAVMGPSGAGKTTFLSAIAGKAFGCKVTGSIFINGKNESIHSFKRIIGFVPQDDIVHGNLTVEENFRFSAQCRLPADLPKPDKVLIVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLAKGGVTVYHGSVQKVEEYFAGLGITIPKRINPPDYFIDILEGIAMPSGSSGVSYKELPVRWMLHNGYPVPLDMQKNSAQYDTYVATNQVKEMDVDGSSHEERSFVGELCQDVRNVMELKGEKIRLNFLKSNDLSDRKTPGIFKQYKYFLIRVGKQQLREAKIQAIDYLILLLAGACLGSLSKASDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDQFNSVVKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYALAIFFEPGAAQLWSVLLPVVLTLIATQPKDSKFLKGIANLCYSKWALEAFIIANAERYDGVWLLTRCGSLMKSGYNLHDWSLCISILILMGVIARAVAFFCMLTFQKK*	1110

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g1297	1109	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	502	744	IPR003439	GO:0005524
	Apr8g1297	1109	Gene3D	-	486	739	IPR027417	-
	Apr8g1297	1109	Pfam	ABC-2 type transporter	700	1109	IPR043926	GO:0140359
	Apr8g1297	1109	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 24	31	1106	-	-
	Apr8g1297	1109	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	31	1106	-	-
	Apr8g1297	1109	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	502	735	IPR027417	-
	Apr8g1297	1109	SMART	AAA_5	528	720	IPR003593	-
	Apr8g1297	1109	ProSitePatterns	ABC transporters family signature.	643	657	IPR017871	GO:0005524
	Apr8g1297	1109	Pfam	ABC transporter	521	671	IPR003439	GO:0005524
	Apr8g1297	1109	CDD	ABCG_EPDR	500	726	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g1297	Apr-Chr8	19249927	19280474	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g1297	526	722	Calmodulin-binding Proteins	AT2G36910	27.723	4.22e-10	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g1297	-		-	gmx:100783798	1862.04