Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1295 ATGCTAGCATTATCCCCTCCTATGTTCTCAACCATTGGGTGGCCCTTTGAGGAGCCCATAAGCCACAGACAGAACTATTTGTTCGAAGACACTACTCAAGCCTCAGAACTATATCACCATCACTTGTCTTCATTTTCGCCACAGGTAGAAACATCTACTCCCTCACCTGCCATAAGCTGCGATCTTACCATGGTCAAAAAGCTTAACCACAATGCTAGTGAACGTGATCGGCGCAAGAAGATCAACGCCTTGTATTCTTCACTTCGTTCACTTCTTCCGGTGGCAGATCAAATGAAGAAATTGAGCATTCCGGCAACAATTTCGCGAGTCCTAAAATACATACCAGAGTTACAGCAGCAAGTGGAAGGACTAAATAAGAAAAAAGAAGAAACTTTGTCGAAAATTTCTCGTCAAGGTGATGCTATGGTCAGCAAAGAATCCGGAAGGAAGATTGCTAATCACAACTCTGGTTTTGTGGTTTCGACAAGTAGGCTCAGTGATAATGAGGCTGCAATTCAGATTTCTTCTCGCATGGTCAGCAAGATTCCACTATCTGAGATCTTGCTGTGTTTAGAAAATGATGGCCTTTTACTGCTAAATGTTTCTTCCTATGAGACGTATGGTGGAAGGGTCTTCTATAACTTGCATTTCCAGGTTAATAAATTTCAGAGATTAGAATCCGAGATTCTAAGTGAGAAGCTTTTATCTATAATTGGGAGCAAAAATGGGAATTTCCTAGTCAAACGAAATTAG 753 0.413 MLALSPPMFSTIGWPFEEPISHRQNYLFEDTTQASELYHHHLSSFSPQVETSTPSPAISCDLTMVKKLNHNASERDRRKKINALYSSLRSLLPVADQMKKLSIPATISRVLKYIPELQQQVEGLNKKKEETLSKISRQGDAMVSKESGRKIANHNSGFVVSTSRLSDNEAAIQISSRMVSKIPLSEILLCLENDGLLLLNVSSYETYGGRVFYNLHFQVNKFQRLESEILSEKLLSIIGSKNGNFLVKRN* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1295 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 134 IPR036638 GO:0046983
Apr8g1295 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 117 IPR011598 GO:0046983
Apr8g1295 250 Coils Coil 114 134 - -
Apr8g1295 250 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 238 - -
Apr8g1295 250 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 238 IPR015660 GO:0003700|GO:0006357
Apr8g1295 250 SMART finulus 71 123 IPR011598 GO:0046983
Apr8g1295 250 Pfam Helix-loop-helix DNA-binding domain 66 118 IPR011598 GO:0046983
Apr8g1295 250 Gene3D - 62 145 IPR036638 GO:0046983
Apr8g1295 250 CDD bHLH_AtORG2_like 66 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1295 Apr-Chr8 18793219 18795736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1295 1 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 44.534 3.42e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1295 HLH 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1295 - - vvi:100262373 274.633