Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1293 ATGGAGAACTCTGAGCTCTTCCAATTCTTCACAAACACCCACGATTCCTTCTTCAACTCTGCGTTTTTCGGCTTCCCTTCAGCATCAACGATGCCACATAGCTTCTGTAGCTCCTCTTCTTATTACCCTGTGGAAGCATCTGATGCACCATCTCATCATGATAAAGCTCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAAAGGAGGAGGGAAAGAATCAACTCTCACCTCGACAAGCTTCGCACTCTTCTTCCTTGCAGTTCCAAGACAGACAAGGCTTCACTTCTTGCGAAGGTGGTCGAAAGGGTGAAAGAGTTGAAGCATCAAACATCTAAAATCACCGAATCTGAAACCTTTCCTTCGGAGACGGACGAGATGACTGTTGTGTCCACCAGCGGTGACGGGGATGGAAGGCTCATATTCAAAGCCTCTCTATGTTGTGAAGATCGCTCTGACCTCATCCCTGACCTCATTGAAATTCTTAGGTCCTTACATCTCAAAACGCTCAAAGCCGAAATGGCAACGCTTGGTGGAAGAACCCGCAATGTTCTTGTCGTCGCCACTGATAAAGATCATAGCGTTGAATCCATCCAGTTTCTGCACAACTCGCTCAAGTCTTTGGTAGAACGCTCCGATTCTCGCGACCGATCCAAACGCCGCCGTTTCTAA 672 0.4762 MENSELFQFFTNTHDSFFNSAFFGFPSASTMPHSFCSSSSYYPVEASDAPSHHDKALAALRNHKEAEKRRRERINSHLDKLRTLLPCSSKTDKASLLAKVVERVKELKHQTSKITESETFPSETDEMTVVSTSGDGDGRLIFKASLCCEDRSDLIPDLIEILRSLHLKTLKAEMATLGGRTRNVLVVATDKDHSVESIQFLHNSLKSLVERSDSRDRSKRRRF* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1293 223 Pfam Helix-loop-helix DNA-binding domain 62 107 IPR011598 GO:0046983
Apr8g1293 223 SMART finulus 64 113 IPR011598 GO:0046983
Apr8g1293 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
Apr8g1293 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 117 IPR036638 GO:0046983
Apr8g1293 223 PANTHER TRANSCRIPTION FACTOR BHLH30 19 222 IPR045847 GO:0003700|GO:0006355
Apr8g1293 223 Gene3D - 53 119 IPR036638 GO:0046983
Apr8g1293 223 CDD bHLH_AtAIG1_like 54 129 - -
Apr8g1293 223 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 19 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1293 Apr-Chr8 18587583 18588947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1293 30 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 63.918 5.14e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1293 HLH 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1293 - K22484 gmx:100790009 332.028