Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1289 ATGGGAATCTGTCATGGAAAACCCATTGAGACCCAACAAAGCGAGAGAGAGAACACAGAATTTAGCAGTGAACAAGCAGCGTCAACAACCACCAAATCTTCATCAAAATTTCCATTCTACAGCCCAAGCCCTTTGCCAAGTTGGTTCAAATCCTCACCTGCCAACCCAAACAGCGTGACTTCGACGCCGCTGAGGATCTTGAAGCGACCCTTCCCTCCTCCGTCGCCCGCCAAGCACATTCGGGCGCTGCTGGCTCGGCGCCACGGCTCCGTCAAGCCCAACGAGGCGTCCATTCCGGAAGGAAGCGAGTGTGAGGTTGTTGGACTTGACAAGAGCTTTGGGTTCTCTAAACAGTTTTCGGCCCATTATGAGCTCAATCAAGAAGTGGGCCGTGGCCATTTTGGTTACACTTGCTCTGCCAAAGCCAAGAAGGGTTCCTTCAAAGGCATCGATGTTGCCGTCAAAGTCATTCCCAAAGCCAAGATGACCACAGCAATTGCTATAGAGGATGTAAGGCGAGAAGTGAAGATATTGCGGGCTCTAACAGGACATAGGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGAGAATTGCTAGATAGGATTCTTTCCAGGGGTGGGAAGTATTCAGAAGAGGATGCCAGAGTTGTTATGATCCAAATATTAAGTGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCACCGTGATCTGAAGCCAGAGAATTTTCTATTCACGTCTAAGGATGAAAATTCAACATTGAAGGCCATTGATTTTGGATTATCTGACTATGTAAAGCCAGATGAGAGGTTGAATGATATTGTAGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGTCGTCCCTTTTGGGCCCGCACAGAATCTGGTATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCCTCTTTATCTGCTGATGCAAAAGATTTTGTAAAGAGGTTGTTGAATAAGGATTATCGGAAAAGATTAACAGCAGCTCAGGCACTCAGTCATCCATGGCTGGTGAATCATCATGATGACATAAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCTTTACGTAAATCTGCTTTAGGGGCTCTTGCAAAGACATTGACTGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTGTTAGGGCCAAACAAAAGTGGGTTAATCTCTATGCAGAACTTTAAGGCGGCTGTTTTGAGGAGCTCCACCGATGCCTCAAAGGATTCACGGGTTTTGGATTTTATGTCGCAGGTTAGTTCTATCCAATATAGGAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTGCACCAACTTGAAGGCATGGAGAGCTGGGAGCAACACGCGAGGCATGCCTATGACCTTTTTGAAAAGGATGGAAATCGACCAATTATGATTGAAGAGTTGGCCTCGGAACTTGGGCTTAGTCCATCTGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGACACTCAGATGGGAAGCTCAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCTCGCGCATTTCAAAAGGCTTGA 1734 0.4458 MGICHGKPIETQQSERENTEFSSEQAASTTTKSSSKFPFYSPSPLPSWFKSSPANPNSVTSTPLRILKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVVGLDKSFGFSKQFSAHYELNQEVGRGHFGYTCSAKAKKGSFKGIDVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHRNLVQFYEAYEDDDNVYIVMELCKGGELLDRILSRGGKYSEEDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDIRIPLDMIIHKLVKAYICSSSLRKSALGALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKAAVLRSSTDASKDSRVLDFMSQVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARHAYDLFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1289 577 MobiDBLite consensus disorder prediction 1 72 - -
Apr8g1289 577 CDD STKc_CAMK 122 384 - -
Apr8g1289 577 Gene3D Phosphorylase Kinase; domain 1 116 212 - -
Apr8g1289 577 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1289 577 SUPERFAMILY Protein kinase-like (PK-like) 114 415 IPR011009 -
Apr8g1289 577 Gene3D - 407 568 - -
Apr8g1289 577 SUPERFAMILY EF-hand 415 568 IPR011992 -
Apr8g1289 577 ProSitePatterns Protein kinases ATP-binding region signature. 129 155 IPR017441 GO:0005524
Apr8g1289 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Apr8g1289 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 572 - -
Apr8g1289 577 MobiDBLite consensus disorder prediction 15 64 - -
Apr8g1289 577 ProSiteProfiles Protein kinase domain profile. 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1289 577 Gene3D Transferase(Phosphotransferase) domain 1 213 406 - -
Apr8g1289 577 PANTHER CDPK-RELATED KINASE 1 25 572 - -
Apr8g1289 577 SMART serkin_6 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1289 Apr-Chr8 18238218 18246122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1289 1 575 EF-hand Containing Proteins AT3G50530 67.353 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr8g1289 Pkinase 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1289 - - gmx:100796678 1053.12