Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr8g1285 | ATGAGCGCAGTGATAAATTCTCATCCCTTCTCTCATTCTCTGTTCCTCACCCTCTTTCTCTTTCAATCCCTCACTGTTAATCAGGAAATGGAGGAGGATATGGAAATTGATCATATTGTGGATATTCCTGATACCCCAGATAGAATAATTTACGATCAGAAATATTTCAGTAATCCTGAGAAGAGGGAGAGGGGTTTTACTTTTGCAGATGAAATGAATAATGGCCGCAACTATATAAATTTGTCCCCATCAGAGAAATCTTGTCCTTCTCAAAATGCTCCCATCTTTAGGAGAGCTCAAACTGAGAAATTATCTGGACTTGGGACAACACATTTGAATGGAACTGAAAAGATGGAGAAAGGGAAAGCTATAGGCTCTAAGTTTCCTTCTAAATCATCTCGCCATGGGCCTATTTCTGTTTTAGATTTGACTGAAGAGAATGGACAATTCCAACAACTGAAACCAGCTTTATCACATCATGGATCAAGATATAATGCAACTGAAGACAAGAAAGAATCAAAAGCAAGTATTGGGAACTCTTCATTACCATTTTATGCTGATTCTTCTAATACATCTAGAAATGCCTTCACTGGAAAGGGTAAACTAGATAATAAAACACTTCCAGGCCCTAAAGTATCTGTGGACCGTGGCAAGAGTATTTCTCTGCCTAATGATTCTCAGTCTCAATCACCAAATGAAAAGCAAGTGTCTTTGCCTCCTTGTCTTTCCACTGCTCCACAATGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCTCATAATATTGCAACTAGGGCAAAGCAATCAGCTAAACAGAGCAGCCATCAGACCAAAAGTGTTGAACAGAGTCAAGCTGGGCATTCGGTTTCTAGCAATACTGTATCGCTGATTAGTGTTGATGATACAGTTGCTGAAGAGAGAGGCAGTGGTAGAGCAAAAGGAAAGGAAGTACTTACTCATCCTTCATCACATGGACTTCATGCCACAACTTTTCACACCAACAGCAGCCCTGTAATCAACTGCGAAGAGGCCAACAGTACCCTTAATGCTTTAAGAAATTCATTTCAATACACTGAGGGACAAGGTGGTTGGAGAACTACACATAATGAAAGAAATGCTGATCAACAATTGTACAATGTAAATGGGCTTCATTCAAGAAGGAATTGTGATACTGGAAGATTTATTAATAGACGAAATATCAGCATAATGGACAAAAGAAACACTGGGAACAGTCAAAGCAGCAATGATGTTCATACTTCTCTATTAGATCATAGTGCTCAACCAACTTCTGTGATCATTCCAGATGTAGACCAGTCAACTGGAACCCATCATACTGCTGACATTCTGACTAAAAGGCAAAGAAAACGGGAATCACCTTCAGGAAATCCTAATGATGCATCTTATAGTTATAATTCAGAGGTCATGTTCCTCAGTTCGTCTGGGGAATCATCTAGCTCATCCCGGAGCCCTGTCTTGGATCCTGAGGTGGTTGAGTTGTTATCTACACCAGGGTTTGCCAACAGATCATCTGAAGATGTAGATGACAATGACAAAAATATTTTGGATGCTCGGGCAAGACAAGTAGAAGCAGATGAGATTTTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATTTTTTTGAAGGCAGAGGGATTGATGAACATTTAGCATGGGAGCCGCAGCATGCAGAGGATCTTCTGCATACATCTATTGATAGTCACGATATATATCATCCTACATGGTTTCCAAGGGCAAACAGACAGCCTCGTTCACGGTCTCATCAAAATCCTTCGAATAGGAGGAGAAATGTGCCACAAGCTTCTTTCTCTAATAGAATGTTGCAGTCGAGGAGTCGCATTGCAAATCAGCCACCTATCATATCATCTAGAGGAAGACGCCCCCAATTTCCTCTGGATATGGACTTAGACATGAGACTTGATATATTGGAAGCTTTAGAGGATGCTGTAGGGGATTTCAGTGATATGGGAATGGCTGATGACATCTTTCATACTCGACGTGATTTCAACGAAGATGATTATGAAATGTTGTTGGCTCTTGATGAGGGAAATCACCAACATACTGGTGCATCCGCCTATCAGATCAATAGTTTGCCACAGTCCACTGTCCAGACTGACAACTTTGCAGAGGCTTGTGCCATATGTCTTGAGACCCCAGTAAAGGGGGAAAGTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCGTAGGAAAACATCATGCCCTGTGTGCAAGTCATCTATTGCCTAA | 2304 | 0.4115 | MSAVINSHPFSHSLFLTLFLFQSLTVNQEMEEDMEIDHIVDIPDTPDRIIYDQKYFSNPEKRERGFTFADEMNNGRNYINLSPSEKSCPSQNAPIFRRAQTEKLSGLGTTHLNGTEKMEKGKAIGSKFPSKSSRHGPISVLDLTEENGQFQQLKPALSHHGSRYNATEDKKESKASIGNSSLPFYADSSNTSRNAFTGKGKLDNKTLPGPKVSVDRGKSISLPNDSQSQSPNEKQVSLPPCLSTAPQCRGHKRLVRNGCISPHNIATRAKQSAKQSSHQTKSVEQSQAGHSVSSNTVSLISVDDTVAEERGSGRAKGKEVLTHPSSHGLHATTFHTNSSPVINCEEANSTLNALRNSFQYTEGQGGWRTTHNERNADQQLYNVNGLHSRRNCDTGRFINRRNISIMDKRNTGNSQSSNDVHTSLLDHSAQPTSVIIPDVDQSTGTHHTADILTKRQRKRESPSGNPNDASYSYNSEVMFLSSSGESSSSSRSPVLDPEVVELLSTPGFANRSSEDVDDNDKNILDARARQVEADEILARELQEQLYHDDFFEGRGIDEHLAWEPQHAEDLLHTSIDSHDIYHPTWFPRANRQPRSRSHQNPSNRRRNVPQASFSNRMLQSRSRIANQPPIISSRGRRPQFPLDMDLDMRLDILEALEDAVGDFSDMGMADDIFHTRRDFNEDDYEMLLALDEGNHQHTGASAYQINSLPQSTVQTDNFAEACAICLETPVKGESIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIA* | 768 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 107 | 137 | - | - | |
| Apr8g1285 | 767 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 525 | 765 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 435 | 449 | - | - | |
| Apr8g1285 | 767 | Pfam | Ring finger domain | 721 | 763 | IPR001841 | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 435 | 472 | - | - | |
| Apr8g1285 | 767 | ProSiteProfiles | Zinc finger RING-type profile. | 722 | 763 | IPR001841 | - | |
| Apr8g1285 | 767 | PANTHER | - | 525 | 765 | - | - | |
| Apr8g1285 | 767 | SMART | ring_2 | 722 | 762 | IPR001841 | - | |
| Apr8g1285 | 767 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 689 | 767 | IPR013083 | - | |
| Apr8g1285 | 767 | SUPERFAMILY | RING/U-box | 721 | 766 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 154 | 239 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 307 | 323 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 584 | 638 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 590 | 633 | - | - | |
| Apr8g1285 | 767 | CDD | RING-H2_PA-TM-RING | 722 | 763 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 219 | 239 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 176 | 199 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 267 | 334 | - | - | |
| Apr8g1285 | 767 | MobiDBLite | consensus disorder prediction | 267 | 302 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr8g1285 | Apr-Chr8 | 18038913 | 18062165 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr8g1285 | 32 | 766 | C3H Transcription Factor Family | AT1G04790 | 32.115 | 7.04e-82 | 272 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr8g1285 | - | - | aprc:113872307 | 1511.12 |