Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1276 ATGTTAGGGGAGGAAACCAACGACCGCGCCGCCGGTCACCGGAGAACATATTCCCGCTCAGTTTCTTGGACTGACCGGTCTCCAGTTATCCGGAAGCCTTCGGCGCCGGGGAACACCAAACCGAGAGCGTTGTTGCCACCGCTTCAGCCACTTTCCATCAACAAACGCAGCGTTGAGGAGTGGCCAAGTGCTGGATCTGATGATCTCGGAGTTTGGCCTCTTCCACAGACCCCAAGAGGGTCAATAATAAACCCGGGTTCGGGTTCGGGTTCGGGTTCGGGTCAACCCGTTAAGGAGTTTCAGTTGAGGAGGGACAAGTTGGCCTTTTACGACAAAGAGTGTTCCAGAATAGCGGAGCACGTGTACTTGGGGAGTGACACGGTGGCCAAGAACCACGAGCTTCTGAGGCAGAACGGGATCACGCACGTGCTTAACTGCGTGGGCTTCGTTTGCCCCGAGTATTTCCAAACCCACTTCGTGTACAAGACACTGTGGTTGCAGGATAGTCCCTCTGAGGACATCACAAGCATTCTCTATGATGTTTTTGATTATTTTGAGGATGTTCGACAGCAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGGGTTTCGAGATCAACCTCTTTGGTTATTGCTTATCTCATGTGGAGGGAGGGTCAGAGCTTTGAGGATGCGTTTCAGTATGTGAAGAATGCGAGGGGTGTCACCAATCCTAACATGGGTTTCGCTTGTCAACTCTTGCAGTGTCAGAAAAGGGTACATGCTGTTCCTGCGAGTCCTAATTCTGTTCTTAGGATGTACAGGATGGCTCCTCATTCCCCTTATGACCCTCTTCATCTTGTTCCTAAAATGGTTAACCACCCTTGTGCACAAGCACTTGATTCTCGTGGGGCTTTCATTGTTCATGTTCCTTCTGCTATATATGTGTGGATTGGGAAAGATTGTGGTTCTGTTATGTCTTGTAATGCACGATCAGCAGCTGTTCAGGTTGTGCGTTATGAGAAGGCAACGGGTTCGATTCTTAGTGTTGTTGAGGATGAAGAGCCACCAGGTTTTTGGGTTGCTCTTTCTACTAACCAACAATTGTTAGCAGGTGATTGTGAAAAAGAGGTTAAGAAGGATGTAAGGTTGAGTTCTTTGGAGAGAATGGATATTGATGATGCAGTTGATGTGGGAATTCGTCCCAGGAAAGTTGATGAGTATGATTTGGATTTTGGAATTTTCCTCAAGGCTCTTGCTGGTGGGGTTGTTCCACCTTTTTCTGTGTCTAGCACTGGATCAGAAACTTGCCTTCCTGCTAGAGAAAACGGTTGGGGAAGGCTTACAAGAAAGCTTGCGAGTGGCATCATGAAAGGGTTGTTCACATCCTCTAAGTATGAATCGAGTGTGGACATGGAAGAAGAAAATCAACATTCTTTAGGCGATCCTTTAGCACCACCATCTTCAAACCATCTTTGTAGTTCTAGGAATTCCTTTGAATGTTTTCTAGATAACAGCTCGGAAAGGGGGAAACATACCCTTGAAGTCATGGATCACTTTGTTCCTAGTGTTGATTCATCATTGCCACCATCCCCTCATCGACCTGATTCTTTTCCATGTTTTATAAACAGCAGCCCTAAATTTAGTTGCAAGTCACCAACACTTTCACCCTCCAGTTCTGATTATGCTAGTTCCTTCACATTTTCACCTTCCTCTACAAATTGGTCTGACTTGTCATTCGTGTCTTCTCGGCAGCCATCACCTTCTGGCCTGGAATCAGCCGAACCCTTTTATGTTAAAGATGCATCTTTCGCAGAAAGTTCTTCTTTACTTCACAAAGAAGCTGTGTCGTCTTCATCTTCAGAAGCATTTTTGGCTAATCACACCTTGGAAGGGGCAAACTCTTGTGTGCCATGCAAAGGATCTTACCCCTCCATTGCAGAGCGCAGAGGGAGTAACCCGCCACCTCGCATGTTGCTACCGTCGGCCAGTGAACCATCTCATTCCCACAAGATCCAGGTAAGATCACAGTCATTGTCTTTGCCTGACTTGGATGATAATCTGATGAAGGATGTTAGTTGCAAGCAATCTGACCGCGAAAACAGTGGAAAATGGCTAATATCAGATGCTGATGTTATTAGTGAAGCTGTTGAAAATGAGGTTAATGGTAGAGGATCGTCGTAG 2163 0.4651 MLGEETNDRAAGHRRTYSRSVSWTDRSPVIRKPSAPGNTKPRALLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIINPGSGSGSGSGQPVKEFQLRRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFQTHFVYKTLWLQDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAVPASPNSVLRMYRMAPHSPYDPLHLVPKMVNHPCAQALDSRGAFIVHVPSAIYVWIGKDCGSVMSCNARSAAVQVVRYEKATGSILSVVEDEEPPGFWVALSTNQQLLAGDCEKEVKKDVRLSSLERMDIDDAVDVGIRPRKVDEYDLDFGIFLKALAGGVVPPFSVSSTGSETCLPARENGWGRLTRKLASGIMKGLFTSSKYESSVDMEEENQHSLGDPLAPPSSNHLCSSRNSFECFLDNSSERGKHTLEVMDHFVPSVDSSLPPSPHRPDSFPCFINSSPKFSCKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESAEPFYVKDASFAESSSLLHKEAVSSSSSEAFLANHTLEGANSCVPCKGSYPSIAERRGSNPPPRMLLPSASEPSHSHKIQVRSQSLSLPDLDDNLMKDVSCKQSDRENSGKWLISDADVISEAVENEVNGRGSS* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1276 720 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 233 IPR000387 GO:0016311|GO:0016791
Apr8g1276 720 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 11 660 - -
Apr8g1276 720 MobiDBLite consensus disorder prediction 1 47 - -
Apr8g1276 720 MobiDBLite consensus disorder prediction 1 15 - -
Apr8g1276 720 ProSiteProfiles Dual specificity protein phosphatase domain profile. 113 255 IPR020422 GO:0006470|GO:0008138
Apr8g1276 720 MobiDBLite consensus disorder prediction 640 678 - -
Apr8g1276 720 Gene3D Protein tyrosine phosphatase superfamily 93 255 IPR029021 -
Apr8g1276 720 SUPERFAMILY Actin depolymerizing proteins 259 358 - -
Apr8g1276 720 MobiDBLite consensus disorder prediction 465 484 - -
Apr8g1276 720 MobiDBLite consensus disorder prediction 659 676 - -
Apr8g1276 720 ProSitePatterns Tyrosine specific protein phosphatases active site. 197 207 IPR016130 GO:0016311|GO:0016791
Apr8g1276 720 Gene3D Severin 265 362 IPR029006 -
Apr8g1276 720 PANTHER MKPA PROTEIN 11 660 - -
Apr8g1276 720 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 103 254 IPR029021 -
Apr8g1276 720 CDD DSP 114 248 - -
Apr8g1276 720 Pfam Dual specificity phosphatase, catalytic domain 121 251 IPR000340 GO:0008138|GO:0016311
Apr8g1276 720 SMART dsp_5 113 252 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1276 Apr-Chr8 17823250 17825797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1276 1 149 Protein tyrosine phosphatase (PTP) family AT3G55270 41.081 6.43e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1276 - - lja:Lj6g3v0574850.1 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1276 8 17823250 17825797 Apr10g2243 10 34703497 34708672 PCT