Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1261 ATGGCTTCTCAACCCAAAAAACCGCTACCTCAGCCCCTTAACCAGCATCATGATACCCCAACACCTTCCCCTCATCGTTCACCCGTTACATCACTTCCTGTCCCAGTCCCCCGTCTACCTTCCCTAAAAGATGATCATAGCAATATTCTTCGACTCATTATGATTGTCATGGCATGCATGTTTGGCGTTGTCATGTTCCTATGCACCGTCTCCATAATCATAAAGCGCTATTACTCAAGGAGACACAACAATAACCGTAACGGTAACCGAAACAGAACAGAGTCGCCCATATTGTTCGATGTTAACGAGGGTTCTTTTTCAGACAATGATGACAACGACGAGCGTGGTGATGTCATGCACCCCATATGGTTCATACGCACGGAGGGTCTCCAACAATCGTTCATAGATTCCATCACTGTCTTCAAATACGGAAAACACGAAGGACTCATAGATGGAACAGATTGCTCTGTTTGCTTAGGTGAGTTCCAACATGGCGAGAGTCTCAGACTCTTACCCAAGTGTAACCACGCTTTTCACATCCCTTGCATTGACACGTGGCTTAGGTCACATAAAAATTGCCCCTTGTGCCGTGCACCTGTGGTGAGACCCACTGATCAGAATCATAATCATAATGACGATCACAATCACACAGATACAAACGTTTTTTATGATAATCAAGAGACCCATGTGGAGAATTCTGAAGGAGAAAGTGATAGTAGTGGAATCAGGAGTGAAATTGAAGGTGAAGATGGTTGTGGGGTGTCGTCTAGTGGAATCAAAGATAAAGTGGAAGGGGAAATAGAGCCTCTGAGGAGGTCGGTTTCAATGGATTCATGTTCTGGTTCACTGATATTTTGTGATGTGGCGGTGGTGGAGGATTTGAATTGCCTTGAAAAAGTGAATTGTAGTAGTAGCAAGGGTGCTATTAACAGTTCAACGAGAGTTTGCAAGGTGGGTTCAATTGGACAAAAGAGACCGGTCTCAATGAGAAGATCGTTTTCACAAAACAGGAAATTTGTGTTTTCTAGACACTGTAGGAGCCAGAGTTCAACTCTTCCTTTGTAA 1065 0.4404 MASQPKKPLPQPLNQHHDTPTPSPHRSPVTSLPVPVPRLPSLKDDHSNILRLIMIVMACMFGVVMFLCTVSIIIKRYYSRRHNNNRNGNRNRTESPILFDVNEGSFSDNDDNDERGDVMHPIWFIRTEGLQQSFIDSITVFKYGKHEGLIDGTDCSVCLGEFQHGESLRLLPKCNHAFHIPCIDTWLRSHKNCPLCRAPVVRPTDQNHNHNDDHNHTDTNVFYDNQETHVENSEGESDSSGIRSEIEGEDGCGVSSSGIKDKVEGEIEPLRRSVSMDSCSGSLIFCDVAVVEDLNCLEKVNCSSSKGAINSSTRVCKVGSIGQKRPVSMRRSFSQNRKFVFSRHCRSQSSTLPL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1261 354 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 346 IPR044675 -
Apr8g1261 354 SMART ring_2 155 196 IPR001841 -
Apr8g1261 354 MobiDBLite consensus disorder prediction 229 245 - -
Apr8g1261 354 PANTHER RING-H2 FINGER PROTEIN ATL54 26 346 - -
Apr8g1261 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 205 IPR013083 -
Apr8g1261 354 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g1261 354 MobiDBLite consensus disorder prediction 229 258 - -
Apr8g1261 354 SUPERFAMILY RING/U-box 148 208 - -
Apr8g1261 354 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Apr8g1261 354 MobiDBLite consensus disorder prediction 1 38 - -
Apr8g1261 354 CDD mRING-H2-C3H2C2D_ZSWM2 155 197 - -
Apr8g1261 354 Pfam Ring finger domain 154 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1261 Apr-Chr8 17657399 17658860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1261 39 201 C3H Transcription Factor Family AT1G72220 47.674 4.49e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1261 - - gmx:102663026 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1261 8 17657399 17658860 Apr10g2228 10 34633896 34634945 PCT