Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1259 ATGAAGAGACTTGGCAGCTCCGATTCTTTGGGTGCTCTCATGACGATTTGTCCAACAGCAGACGAACACAGTCCGAGGAACAACCACGTGTATGGTAGGGAGTTTCAGTCGATGTTGGAAGGGCTAGATGAAGAAGGGTGTGTTGAAGAATCAGGGCATCACACTGAGAAGAAACGAAGACTAAGTGTGGATCAGGTGAAGGCTTTGGAGAAGAACTTTGAGGTAGAAAACAAGCTGGAACCTGACAGAAAGGTGAAGCTTGCTCAAGAGCTCGGTTTGCAACCAAGACAAGTAGCCGTTTGGTTCCAAAACCGTCGAGCTAGGTGGAAAACAAAACAATTAGAAAGAGATTATGGCGTTCTCAAAGCCAATTATGAAGCACTTAAGCATAACTATGACACCCTCCAACAAGACAACGAAGCCTTACTCAAAGAGATTAAGGAATTGAAATCGAGGCTGCAGGAAGAGAACAATGAAAGCGATGCTTCGGTTAAAGAAGAGATGATAACCCTGCCAGAGTCGGAATACAAGATGATGGAAACCGCCATTCCTGGATCCGACTCAAAGGAATTGAATTATGAATGCTTTAACAAGAGTGATGAAGTGGGTGGTGCTTCGCTTTTCAAAGACGGTTCTTCAGACAGTGACTCTAGCGCGATCTTGAACGAAGAGAACCATAGTCCGAATAACGCGGCGATTTCTTCATGTGGGGTTCTTCAAAGTCATGAGCTTTTGATGTCCCCTGGGTCGTCTTCGCTTAAGTTCAATTGTTCCTCGTCGTCTTCGCCTTCGTCCATGAACTGCTTCCAGTTCCAGAAACAGTACCCGACACAGTACGTGAAGATGGAAGAACACAATTTCCTCAGTGCAGACGAGGCTTGCAATTTCTTCTCAGATGAACAACCACCCACACTGCAGTGGTACTGTTCCGACGAGTGGAGTTAA 945 0.4582 MKRLGSSDSLGALMTICPTADEHSPRNNHVYGREFQSMLEGLDEEGCVEESGHHTEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKHNYDTLQQDNEALLKEIKELKSRLQEENNESDASVKEEMITLPESEYKMMETAIPGSDSKELNYECFNKSDEVGGASLFKDGSSDSDSSAILNEENHSPNNAAISSCGVLQSHELLMSPGSSSLKFNCSSSSSPSSMNCFQFQKQYPTQYVKMEEHNFLSADEACNFFSDEQPPTLQWYCSDEWS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1259 314 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Apr8g1259 314 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Apr8g1259 314 Coils Coil 111 166 - -
Apr8g1259 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 306 - -
Apr8g1259 314 MobiDBLite consensus disorder prediction 210 226 - -
Apr8g1259 314 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Apr8g1259 314 MobiDBLite consensus disorder prediction 207 226 - -
Apr8g1259 314 SUPERFAMILY Homeodomain-like 41 114 IPR009057 -
Apr8g1259 314 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Apr8g1259 314 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Apr8g1259 314 CDD homeodomain 57 113 IPR001356 GO:0003677
Apr8g1259 314 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Apr8g1259 314 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 306 IPR045224 GO:0003700
Apr8g1259 314 Gene3D - 51 119 - -
Apr8g1259 314 SMART HOX_1 55 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1259 Apr-Chr8 17626786 17629092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1259 1 314 Homeobox Transcription Factor Family AT4G40060 47.761 1.75e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr8g1259 Homeodomain 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1259 K09338 - gmx:100796213 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1259 8 17626786 17629092 Apr10g2225 10 34614983 34617341 PCT