Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1251 ATGGAGGAGGAAGAGCATGAGGTGTACGGAGGGGAGATCCCCGACGTCGGAGAGATGGAAGGAGACGTCGACATGTCCGCCGCCGACGATGACGCTGCCGTCAAGGAGCTGGACGAGATGAAGCGCCGTCTAAAGGAGATGGAAGAGGAAGCCGCTGCTCTTCGCGAGATGCAAGCCAAGGTCGAGAAGGAGATTGATCCTGCTAATGCGGCTGCTTCTCAGGCAAGCAAGGAGGAGGCAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACTCCAGAAGAAGTGCAGCAACACTTTCAATCATGCGGTACTGTGAACAGGGTCACTATCTTGACTGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTGTTGAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGTCCTAGGCGCTTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATCCTCCTCCTTACTTTTACTCCCATTATGGATATGGGAAGGTTCCTAGGTTTAGGAGGCCAGGTCGTTACATGCCGTACTACTAG 636 0.4984 MEEEEHEVYGGEIPDVGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIDPANAAASQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYPPPYFYSHYGYGKVPRFRRPGRYMPYY* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1251 211 SMART rrm1_1 84 155 IPR000504 GO:0003723
Apr8g1251 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 153 IPR000504 GO:0003723
Apr8g1251 211 PANTHER - 1 209 - -
Apr8g1251 211 MobiDBLite consensus disorder prediction 1 22 - -
Apr8g1251 211 CDD RRM_II_PABPs 84 155 - -
Apr8g1251 211 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 209 - -
Apr8g1251 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 159 IPR000504 GO:0003723
Apr8g1251 211 SUPERFAMILY RNA-binding domain, RBD 73 180 IPR035979 GO:0003676
Apr8g1251 211 Coils Coil 30 64 - -
Apr8g1251 211 Gene3D - 24 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1251 Apr-Chr8 17472390 17478094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1251 80 154 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 2.05e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1251 K14396 - gmx:100789721 336.265