Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1244 ATGGACTTTGTAGTTGTGCTGCTGCTATTAGGTTGCTTGTGTTCTTTGGTCTTGCCAGATCCGCAAGGAGATGCACTATATGCATTGAAGATATCATTGAATGCTTCAGCTCACCAGCTTACTGACTGGAATCAAAATCAAGTGAACCCTTGTACTTGGTCACGTGTTTACTGTGACACAAACAACAATGTTGTTCAAGTGTCACTAGCGTTGATGGGATTCACAGGATACTTGACCCCGAGAATAGGAGTTCTAAAATATCTTTCAGCTCTTTCTTTGCAAGGGAATGGCATCATTGGCGACATACCAAAAGAGTTAGGAAATCTGACAAGCTTGGTCAGGTTGGATTTGGAAAACAACAGATTAACTGGAGAAATACCATCTTCCCTTGGTAATCTCAAAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTCAGTGGGACTATTCCTGAATCTCTTGCCAGTCTTTCAAGCTTGATCAATGTTCTGCTAGATTCAAATAATCTGAGTGGCCAAATTCCAGAGCAGTTATTTGAAGTACCTAAATACAATTTCACGGGAAATAAGTTGAATTGTGGTGTGAACTACCGTCAACCTTGTGCATCAGATAATGCAGATCAAGGTTCATTACACAAACCAAAAATTGGGATCATAGTTGGAATTATTATAGGGTTAGTTGTTATCCTTTTCCTTGGTGGTCTGCTGTCCTTTTGGTTGAAGCGTAGACACAATGACTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGGGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACGGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTGCATAGGAACCTGTTACGGCTGATTGGGTTTTGTACTACTCCAACGGAGCGCCTTTTAGTGTATCCCTTCATGCAGAACTTAAGTGTTGCTTATCGACTACGAGAACTCAAACCTGGGGAACCTGTTTTGGATTGGCCTACAAGAAAACGAGTGGCTCTGGGTACAGCCCGAGGGCTAGAATATCTTCATGAGCATTGCAACCCTAAGATTATTCATCGGGACGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGTGACTTCGGTTTAGCAAAGTTAGTTGATGTTCGAAAAACTAATGTGACGACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCAGAATATTTGTCCACTGGAAAGTCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGAGCGATTGACTTTTCCCGTTTAGAAGAGGAAGACGATGTGCTATTACTTGATCATGTTAAGAAATTAGAACGAGAGAAAAGATTAGATGCTATTGTTGACCGCAACCTAATTAAAAATTACAACATACAAGAAGTAGAAATGATGATACAAGTTGCATTACTCTGCACACAAGCAACGCCAGAAGACCGTCCCTTGATGTCTGAGGTTGTAAGAATGCTAGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAGTGGCAGCATGTAGAGGTCAATCGGAGGCAAGAATATGAGAGATTGCAGCGAAGATTTGACTGGGGAGAAGATTCAGTCTACAATCAAGATGCCATTGAGTTGTCTGGAGGGAGATGA 1821 0.4152 MDFVVVLLLLGCLCSLVLPDPQGDALYALKISLNASAHQLTDWNQNQVNPCTWSRVYCDTNNNVVQVSLALMGFTGYLTPRIGVLKYLSALSLQGNGIIGDIPKELGNLTSLVRLDLENNRLTGEIPSSLGNLKKLQFLTLSQNNLSGTIPESLASLSSLINVLLDSNNLSGQIPEQLFEVPKYNFTGNKLNCGVNYRQPCASDNADQGSLHKPKIGIIVGIIIGLVVILFLGGLLSFWLKRRHNDYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLIKNYNIQEVEMMIQVALLCTQATPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1244 606 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Apr8g1244 606 SMART serkin_6 283 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1244 606 ProSiteProfiles Protein kinase domain profile. 283 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1244 606 PANTHER LRR RECEPTOR-LIKE KINASE 4 606 - -
Apr8g1244 606 SUPERFAMILY Protein kinase-like (PK-like) 263 558 IPR011009 -
Apr8g1244 606 Gene3D Transferase(Phosphotransferase) domain 1 360 577 - -
Apr8g1244 606 Pfam Protein kinase domain 284 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1244 606 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
Apr8g1244 606 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Apr8g1244 606 SUPERFAMILY L domain-like 23 189 - -
Apr8g1244 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Apr8g1244 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 606 - -
Apr8g1244 606 Gene3D Ribonuclease Inhibitor 20 203 IPR032675 -
Apr8g1244 606 Gene3D Phosphorylase Kinase; domain 1 252 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1244 Apr-Chr8 17415507 17424841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1244 1 606 Receptor kinase-like Gene Family AT5G10290 78.218 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Apr8g1244 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1244 - - gmx:100793416 1098.96