Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1243 ATGCCAAATAACAGTGACACCATCCAACCCATTCTTCACAATCTCTCCCAACTCAACACCCGAATGGATTCCCTTCAAACCTTCATCTCCCAATCCATCAAATCCCACACTCTCCTCACTCACCACCAAATGACCACGCTCTCCAACGAGATCGTAACCGCCACGCGCAACGTCATCACCAACGCCGCCGCCATTCTCGCCGCCTCCGAAACCGTTTCTTCTCCGACGTTGGACTCTTCGAAACTCCACGACGGCGAAACCGTGGTCGAACTCGACGCCGTGGAGCTGCTGGCCACGCACCTTCACTTCTGCGAGGTTTGCGGGAAAGGCTTCACGCGCGACGCGAACCTGCGAATGCACATGCGCGCACACGGGGACGAGTTCAAGACCCCGGAAGCGTTGGCAAAGAAGGCGTGTGGGGACACGCGCTTTAAGGCGACGCGGTTTTCGTGTCCCTTTGAGGGTTGCAACCGTAACAGGTTACATAAGAAGTTCAGGCCCTTGAAGTCGGTGTTGTGTTTGAGGAACCATTTTAAGAGGAGCCATTGTCCCAAAACGCTGTCGTGTGATCGGTGTCGGAAGAAGAGCTTTGCGGTGCTTTCGGACTTTAAGAGCCACGTGAAGCAGTGTCGGGGTGAGTCCACGTGGAAGTGCTCTTGCGGAACCACGTTTTCCAGAAAGGAGAAGTTGTTCGGACACGTGGCACTCTTCGAAGGGCATTTGCCTGCGCTTGAAGAGGATAAAGAAAAGGAAGTAATGAAGGAAAGTGATGATTGTGTGGATGAGTTACCTGAAGGGTTCTTTGATGGTTTGGATGAGTTTGAGTTTGAGTTTGGGTTTGGGTTTGGTTCCTTTCAAAACAACTCTTTGCAAGAGGAACCTTGGGATTTTTCCCACTCTTAG 903 0.5216 MPNNSDTIQPILHNLSQLNTRMDSLQTFISQSIKSHTLLTHHQMTTLSNEIVTATRNVITNAAAILAASETVSSPTLDSSKLHDGETVVELDAVELLATHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALAKKACGDTRFKATRFSCPFEGCNRNRLHKKFRPLKSVLCLRNHFKRSHCPKTLSCDRCRKKSFAVLSDFKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVALFEGHLPALEEDKEKEVMKESDDCVDELPEGFFDGLDEFEFEFGFGFGSFQNNSLQEEPWDFSHS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1243 300 Pfam Zinc-finger of C2H2 type 103 122 - -
Apr8g1243 300 Gene3D Classic Zinc Finger 102 131 - -
Apr8g1243 300 SUPERFAMILY beta-beta-alpha zinc fingers 101 126 IPR036236 -
Apr8g1243 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Apr8g1243 300 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 83 265 - -
Apr8g1243 300 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 11 76 - -
Apr8g1243 300 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 11 76 IPR044300 GO:0010044|GO:0010447
Apr8g1243 300 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 83 265 IPR044300 GO:0010044|GO:0010447
Apr8g1243 300 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Apr8g1243 300 SMART c2h2final6 102 124 IPR013087 -
Apr8g1243 300 SMART c2h2final6 149 182 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1243 Apr-Chr8 17411156 17412058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1243 88 287 C2H2 Transcription Factor Family AT1G34370 50.490 7.92e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1243 zf-met 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1243 - - pvu:PHAVU_002G256900g 414.461