Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr8g1243 | ATGCCAAATAACAGTGACACCATCCAACCCATTCTTCACAATCTCTCCCAACTCAACACCCGAATGGATTCCCTTCAAACCTTCATCTCCCAATCCATCAAATCCCACACTCTCCTCACTCACCACCAAATGACCACGCTCTCCAACGAGATCGTAACCGCCACGCGCAACGTCATCACCAACGCCGCCGCCATTCTCGCCGCCTCCGAAACCGTTTCTTCTCCGACGTTGGACTCTTCGAAACTCCACGACGGCGAAACCGTGGTCGAACTCGACGCCGTGGAGCTGCTGGCCACGCACCTTCACTTCTGCGAGGTTTGCGGGAAAGGCTTCACGCGCGACGCGAACCTGCGAATGCACATGCGCGCACACGGGGACGAGTTCAAGACCCCGGAAGCGTTGGCAAAGAAGGCGTGTGGGGACACGCGCTTTAAGGCGACGCGGTTTTCGTGTCCCTTTGAGGGTTGCAACCGTAACAGGTTACATAAGAAGTTCAGGCCCTTGAAGTCGGTGTTGTGTTTGAGGAACCATTTTAAGAGGAGCCATTGTCCCAAAACGCTGTCGTGTGATCGGTGTCGGAAGAAGAGCTTTGCGGTGCTTTCGGACTTTAAGAGCCACGTGAAGCAGTGTCGGGGTGAGTCCACGTGGAAGTGCTCTTGCGGAACCACGTTTTCCAGAAAGGAGAAGTTGTTCGGACACGTGGCACTCTTCGAAGGGCATTTGCCTGCGCTTGAAGAGGATAAAGAAAAGGAAGTAATGAAGGAAAGTGATGATTGTGTGGATGAGTTACCTGAAGGGTTCTTTGATGGTTTGGATGAGTTTGAGTTTGAGTTTGGGTTTGGGTTTGGTTCCTTTCAAAACAACTCTTTGCAAGAGGAACCTTGGGATTTTTCCCACTCTTAG | 903 | 0.5216 | MPNNSDTIQPILHNLSQLNTRMDSLQTFISQSIKSHTLLTHHQMTTLSNEIVTATRNVITNAAAILAASETVSSPTLDSSKLHDGETVVELDAVELLATHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALAKKACGDTRFKATRFSCPFEGCNRNRLHKKFRPLKSVLCLRNHFKRSHCPKTLSCDRCRKKSFAVLSDFKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVALFEGHLPALEEDKEKEVMKESDDCVDELPEGFFDGLDEFEFEFGFGFGSFQNNSLQEEPWDFSHS* | 301 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr8g1243 | 300 | Pfam | Zinc-finger of C2H2 type | 103 | 122 | - | - | |
Apr8g1243 | 300 | Gene3D | Classic Zinc Finger | 102 | 131 | - | - | |
Apr8g1243 | 300 | SUPERFAMILY | beta-beta-alpha zinc fingers | 101 | 126 | IPR036236 | - | |
Apr8g1243 | 300 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 102 | 129 | IPR013087 | - | |
Apr8g1243 | 300 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 83 | 265 | - | - | |
Apr8g1243 | 300 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 11 | 76 | - | - | |
Apr8g1243 | 300 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 11 | 76 | IPR044300 | GO:0010044|GO:0010447 | |
Apr8g1243 | 300 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 83 | 265 | IPR044300 | GO:0010044|GO:0010447 | |
Apr8g1243 | 300 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 104 | 124 | IPR013087 | - | |
Apr8g1243 | 300 | SMART | c2h2final6 | 102 | 124 | IPR013087 | - | |
Apr8g1243 | 300 | SMART | c2h2final6 | 149 | 182 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr8g1243 | Apr-Chr8 | 17411156 | 17412058 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr8g1243 | 88 | 287 | C2H2 Transcription Factor Family | AT1G34370 | 50.490 | 7.92e-69 | 214 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr8g1243 | zf-met | 0.0012 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr8g1243 | - | - | pvu:PHAVU_002G256900g | 414.461 |