Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1200 ATGGCCACCACACTCACTTGGAGGCTCGCTTCCAACAATGGCACCAGCCTTGCCACCAATGATCTCGAAAGAAATGGTGATGGGAAGGCTCAAGAGTCAGAGCCCCCAACTCCACATTCTGTTCTGAAGATGGGATTGAGAGAGCGTAATAGCAGCATGGAGGATCCAGACGGGACATTAGCTAATGTTGCCCAGTGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGTGCAGGAGAAAGAGTATTCCTTAAGGCAGTTATCAGAGCTCATAGATACACGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGTTCATTGAATGTGAAGATACAAGCAGCAACTGTCTTGGGCTCTCTTTGTAAAGAAAATGAGCTGAGGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTACTAAAGTCCAGTTCTACTGAAGGGCAAATTGCTTCTGCAAAGACTATTTATGCTGTATCTCAAGGTGGTGCAAAAGATCATGTTGGTTCAAAAATTTTCTCAACTGAAGGAGTTGTACCAATGCTCTGGGAGCAGCTGAAAAGTGGCCTGAAGACAGGAAATGTAGTTGAAAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAATACTGAGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGGCAACAGGACAGCCTAGCACTTTAGCTAATGTGTGCAATTTACTTGCTTCTATAATGATGGAGGATGCATCTATTTGTTCAAAGGTGTTGACAACAGAGGTGACAAAGCAACTTCTAAAACTATTAGGCCCTGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCCCAGTGCAAAGAGGCTAGGCGAGAGATTGCCAATTCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCAGGTGGTTTGTCTTTTGTCATCTCTAGTCTTGGTCAAAGTCTTGAATCATGCACCTCACCCACCCAAATTGCTGACACATTAGGAGCTTTAGCATCAGCTCTCATGATATATGATAACAAGGCAGAATCTACCAGAACTTCAGATCCTTTGGGAGTTGAGCAGACATTGCTCAAACAATTTAAACCTCGCTTGCCCTTCCTTGTACAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCAGTGCTTTCAACCAAACTTGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCAGCCAATGAAGTGCAAGACGAGCTTATAAAAGCTCTGTTGACACTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGCGAAGGAGTTCAGCTATTGATATCCCTTTTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCATATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCAGGTGGAATACCACCACTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCGTTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACCTTAAATCATTTAATTCATAAATCTGATACAACAACTATTAGTCAGCTTACAGCATTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGACATTTTACGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACCATGATAACATTAATGAGTTCTACCAAGGAAGAAACTCAGGCAAAATCTGCATCAGCTCTGGCAGGAATTTTTGAAACAAGGAAAGATGTGCGGGAAAGTAGCATTGCTGTTAAAACTCTTTGTTCAGCCATGAAATTGATTAATGTTGAGTCTGAAAGTATCCTTATTGAGTCCACACACTGCCTTGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTCGCTAGAGATGCATTATCCCCCCTAGTTACACTAGCTAACTCTTCAGTTTTGGAAGTTGCAGAAATGGCAACATGTGCTCTAGCAAATCTTATTTTGGACAGTGGAATTGCAGAGAAAGCTATTGCGGAGGAAGTTATCTTGCCTGCCACCAGAGTATTATGTGAAGGCACAATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCAGGAAGTTGATTATGTTGTAACTGATTGTGTGAATCGTGCTGGAACTGTTCTTGCACTAGTTTCTTTCTTAGATTCGGCTGTTAATGGATCTGCTGCCACATCAGAAGCTCTAGAAGCACTTGCCATCCTGTCCAGGTCCGGAGAGACCAGTGCACATACTAAACCTGCTTGTGCAGTTTTGGCCGAATTTCCTAAAAGCATAAGCCCAATAGTGTTGTGTATTGTTGATTCAGAACCAATGTTGCAGGATAAAACTATTGAGATTTTGTCTAGACTATGTAAGGATCAACCTGTTGTTTCAGGAGACACTATTGTGTCTGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAGTGTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGCACTGCAAAGGCAAATCATCAGAGACTGTTGGAGGATCTCAATTCATCAAACTTATGTGCTAATCTGATCAAGTCTCTAGTTGATATACTTATTTCTTCACAGTCGTCTTTGGGTTATCCAGATGATGACAATAAGGAATTCATTAGCATATGCAGGCACACAAAAGAAGAGGCCAAAGGTGGTGAATCCAACACTAGCACCACTGTTATATGTGGTGCTGACTTGGTTATATGGTTACTGTCTATTCTTGCTTGTCATGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCGATTGATGTTCTCACCGATAGGATCTCAAATTCTTTCTCACAATATTCTCAGATTGACTACAAAGAAGATAACAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAAGTAGAGATATCATACGGGCACATGCAACCACAAAATCTGTACCAGCACTTGCCAGTTTATTGAAGTCAGAGGAATCAGAAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCCGGGGAACACTTCTGTCGGTGGCAAATTCGGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTTTGGAGTTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTAGAGTAGATGACATAAGAGTTGGTGCCACTTCTCGAAAGGCAATACCTGCCTTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGGGCACCATTTTTAGCACTTGGGTTTTTGACACAGCTTGGCAGAGATTGTCCATCAAATATGAATGTAATGGTAGAGTCAGGGGCCTTAGAGGCACTTACAAAATATCTTTCACTGGGTCCACAAGATGCAACTGAAGAAGCTGCTACGGATCTGCTAGGAATTCTGTTTAGCAGTACTGAAATACGAAAACATGAATCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGATTAGGAGGAAGAGGTGCGAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGATCACATTAGAAATGCAGAGATTGCTCGGCAAGCTGTTCAACCCTTGGTGGAGATTCTCAACAGTGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGGTTGGTTTACTAAGTGAAAACCCATCTAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATCCTTTCATCAGATTGTTCAATGGAGCTCAAGGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACTAGGATTCGGTCCACAATGGCTGCTGCACATTCTGTTGAACCACTTGTCTCTGTCCTTGTAACTGAATTTAGTCCTGCTCAGCTTTCAGCTGTACGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTATCTGGTAGGAATTATGTACTTCATGAAGCCATTTCCAGAGCGCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACGTCTTACATTCGGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTAGTTGAACCATTGTTTTTGTTGCTGACAAGACAGGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTGGAACATCCACAGTGTCGTGCTGACTATTCTTTGACTTCTCACCAAGTTATTGAACCACTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTGTGGAAGAGCACCTTCAGAAGGATCCAGTGACACAGCAAGTGATTGGCCCTCTTATCCGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTAACATGGCCAAATGAAATTGCTAAAGTGGGTGGTGTAATTGAAATTTCCAAAGTGATATTGCAAGTAGACCCTTCCCTTCCTCATGCTTTATGGGAATCTGCTGCCTTGGTTTTGTCAAGTATTCTGCAATTTAGCTCTGAATTCTACTTAGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCACGGAGAGCACAGTTATTGGTGCTTTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAACTCCTGCGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCGTAGAAGTGTTGCTGAATAATGTAAAGATTCGAGAAACAAAAGTTACAAAATCAGCTATCTTACCATTATCCCAGTACCTCTTGGACCCTCAAACTCAAGCACAGCAGGCAAGGTTGTTGGCAACTTTGGCTCTTGGGGATCTGTTCCAGAATGAGGGTCTTGCTCGAACAAGTGATGCCGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCTGTTGCGGAGGCAGGTGGTGTCCAGGTTGTGCTAGATCTAATTGGTTCAAGTGATCCAGAAACATCTGTTCAGGCTGCAAATTTTGTTAAACTTCTCTTCTCAAATAATACCATTCAAGAATATGCTTCTAGCGAAACAGTCAGAGCAATTACTGCCGCTATTGAAAAAGATTTATGGGCTACTGGAACTGTGAATGACGAGTACCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCTAGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCTCATCTGGTTACATCTTTGAAGACGGGTTCAGAGGCTTGTCAGGAAGCTGCATTGGATGCGCTTTTCCTGCTCAGACAAGCTTGGTCAGCTTGCCCTGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCTGATGCAATTCCATTGCTGCAGTACCTAATCCAGTCTGGTCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTATTGCAGTGTTTACCAGGGACACTTGTGGTTATCATCAAGCGTGGCAACAATATGAAGCAGTCTGTTGGAAACCCCAGTGTTTACTGCAAACTTACACTTGGCAACACTCCACCAAGGCAAACTCAGGTGGTTTCCACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACGATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTGGCTGGAGAGTACACACTCTTGCCTCAAAGTAAAAGTGGGCCCCCAAGGAATCTAGAAATAGAGTTTCAGTGGTCTAACAAGTGA 6456 0.4289 MATTLTWRLASNNGTSLATNDLERNGDGKAQESEPPTPHSVLKMGLRERNSSMEDPDGTLANVAQCIEQLRQSSSSVQEKEYSLRQLSELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIASAKTIYAVSQGGAKDHVGSKIFSTEGVVPMLWEQLKSGLKTGNVVESLLTGALKNLSSNTEGFWNATIQAGGVDILVKLLATGQPSTLANVCNLLASIMMEDASICSKVLTTEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSFVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRTSDPLGVEQTLLKQFKPRLPFLVQERTIEALASLYGNPVLSTKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSDILREGSAASDAFDTMITLMSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLCSAMKLINVESESILIESTHCLAAIFLSIKENRDVAAVARDALSPLVTLANSSVLEVAEMATCALANLILDSGIAEKAIAEEVILPATRVLCEGTISGKTHAAAAIARLLHSQEVDYVVTDCVNRAGTVLALVSFLDSAVNGSAATSEALEALAILSRSGETSAHTKPACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVSGDTIVSAPGCISSIAKRIISSTSVKVKIGGAALLICTAKANHQRLLEDLNSSNLCANLIKSLVDILISSQSSLGYPDDDNKEFISICRHTKEEAKGGESNTSTTVICGADLVIWLLSILACHDEKNKIAIMEAGAIDVLTDRISNSFSQYSQIDYKEDNSMWICALLLAILFQSRDIIRAHATTKSVPALASLLKSEESENKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLTQLGRDCPSNMNVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSTEIRKHESAFGAVTQLVAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILNSGSEKEQHAAIAALVGLLSENPSRALAVADVEMNAVDVLCRILSSDCSMELKGDAAELCCALFGNTRIRSTMAAAHSVEPLVSVLVTEFSPAQLSAVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDVLHSAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLVEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKVGGVIEISKVILQVDPSLPHALWESAALVLSSILQFSSEFYLEVPIAVLVRLLRSGTESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLVEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAANFVKLLFSNNTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYTLLPQSKSGPPRNLEIEFQWSNK* 2152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1200 2151 SUPERFAMILY ARM repeat 1365 1654 IPR016024 -
Apr8g1200 2151 Gene3D - 48 406 IPR011989 -
Apr8g1200 2151 Gene3D - 1398 1698 IPR011989 -
Apr8g1200 2151 MobiDBLite consensus disorder prediction 15 41 - -
Apr8g1200 2151 Gene3D - 1699 1816 IPR011989 -
Apr8g1200 2151 SUPERFAMILY ARM repeat 1677 2028 IPR016024 -
Apr8g1200 2151 Coils Coil 297 324 - -
Apr8g1200 2151 Gene3D C2 domain 2028 2151 IPR035892 -
Apr8g1200 2151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2135 IPR035892 -
Apr8g1200 2151 SMART C2_3c 2031 2127 IPR000008 -
Apr8g1200 2151 Gene3D - 407 819 IPR011989 -
Apr8g1200 2151 SUPERFAMILY ARM repeat 539 1151 IPR016024 -
Apr8g1200 2151 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2151 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Apr8g1200 2151 SUPERFAMILY ARM repeat 217 609 IPR016024 -
Apr8g1200 2151 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Apr8g1200 2151 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Apr8g1200 2151 SUPERFAMILY ARM repeat 1186 1436 IPR016024 -
Apr8g1200 2151 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2151 - -
Apr8g1200 2151 SMART arm_5 1566 1607 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 525 565 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 93 135 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 817 859 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 482 523 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1229 1270 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1312 1352 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1730 1769 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 733 771 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 311 360 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 136 176 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1857 1897 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 268 309 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1481 1521 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1398 1438 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 567 607 IPR000225 GO:0005515
Apr8g1200 2151 SMART arm_5 1439 1479 IPR000225 GO:0005515
Apr8g1200 2151 Gene3D - 1183 1397 IPR011989 -
Apr8g1200 2151 Gene3D - 821 1182 IPR011989 -
Apr8g1200 2151 CDD C2 2032 2122 - -
Apr8g1200 2151 Gene3D - 1817 2027 IPR011989 -
Apr8g1200 2151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Apr8g1200 2151 SUPERFAMILY ARM repeat 64 293 IPR016024 -
Apr8g1200 2151 Pfam C2 domain 2030 2120 IPR000008 -
Apr8g1200 2151 ProSiteProfiles C2 domain profile. 2011 2128 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1200 Apr-Chr8 16930893 16940937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1200 496 681 U-box Gene Family AT3G46510 32.000 1.06e-08 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1200 - - gmx:100794002 3786.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1200 8 16930893 16940937 Apr10g2183 10 34301568 34311681 PCT