Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1196 ATGACGGCTCTCTCAGAGCTCTTGTATCAGCTTTATTCAAAAACTATAGTCCTATTAACATATATCCTAATAGAACTTATTCTCATCATTCGCTACCTAAAGTCAGATACAAATTCAATTTCCACCACCCAATACCTCAATTTCATTGAAGAGAACAACCCCACAATTCGTTACACCAGAAGATTGAAGGTAGACCACTTAGATTGCAGGGTGTGCTTATCAGAATTCGAGGAAGGAGAAAATGTGAGGAACTTGAATTGCAAACACACATTTCATAAGGATTGTTTGGACCAGTGGTTGAAGCAATACTGTGCTACCTGTCCACTTTGCAGGAACAAAGTGTTACCAGATCATGTTGTGGAAAAGTACCATCTTCTTCAAAACCAGCTTGAATATGATGCCAATGATGACCAGCTTATCTTTTTGTTGTCTGCATTAAGGGGTGGTAGTACTTTGCACAGATATCTCTGA 471 0.3885 MTALSELLYQLYSKTIVLLTYILIELILIIRYLKSDTNSISTTQYLNFIEENNPTIRYTRRLKVDHLDCRVCLSEFEEGENVRNLNCKHTFHKDCLDQWLKQYCATCPLCRNKVLPDHVVEKYHLLQNQLEYDANDDQLIFLLSALRGGSTLHRYL* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1196 156 SUPERFAMILY RING/U-box 48 118 - -
Apr8g1196 156 PANTHER - 1 151 - -
Apr8g1196 156 Pfam Ring finger domain 68 111 IPR001841 -
Apr8g1196 156 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Apr8g1196 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 151 - -
Apr8g1196 156 CDD mRING-H2-C3H2C2D_ZSWM2 69 111 - -
Apr8g1196 156 SMART ring_2 69 110 IPR001841 -
Apr8g1196 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 116 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1196 Apr-Chr8 16903093 16903563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1196 68 122 C3H Transcription Factor Family AT1G15100 56.364 3.65e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1196 K16282 - gmx:102669811 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1196 8 16903093 16903563 Apr10g2179 10 34267207 34267687 PCT