Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1195 ATGACGGATCACTCAGATTCTTCTCCTCTAATCCCTCCCCCACCCCTCGCCGAGATCGACCTCGAAGCCGCTACCACCGAACAAATTCAATGCCGAATTTGTCTTGAAACTGATGGTAGGGATTTCATTGCTCCTTGCAAGTGCAAAGGTACATCAAAGTATGTACACCGAGAGTGTTTGGATCATTGGCGAGCGGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTACCATTTGCGTGTTCATGGCGCTGCTGATAGAAAATGGCGTACCTTGAAATTTCGTTTTTTTGTGACCAGAGACATTTTGTTTATATTTCTGGCTGTACAGCTTGTCATTGCTTCATTGGCTTATTTGATTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGCCTTGTTTGGGGTTTTGATAGTGAACTGAGCTTTTACTATATTAGCGGAGCATTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGATGCTTTATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAAATATGTCTTTGTTGCTGTCAACCAGGAGTTTGTGCAGACTGTCATTTACCGGGTACCCTTTGTATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGATGCATGGGAGGTGCTGGGGAAGCAGGGTTACCATTATTATTCATAATGGCTTTGATTTTTCTTGGACTCTTTACTGTAATTGGGATATTTTACAGTGTGTTAGTTGCTACCATGGTTGGACAACGGATATGGCAGCGCCATTATCACATACTTGCAAAAAGGATGCTGACAAAGGAGTATGTCGTGGAAGACGTTGATGGAGAGATAACAGGGTCTGATTGGTGTCCTCCGCCTCTCCCCTCGGAGCATGTACAGCAGCTGAAAACACTGGGCCTCCTATGA 963 0.4465 MTDHSDSSPLIPPPPLAEIDLEAATTEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLIYLIDGYQQYWLRLVWGFDSELSFYYISGALLFFVLLGLSGCFITCYDRRVRNDLAQPCREICLCCCQPGVCADCHLPGTLCMWTDCTACFESCGTMATECGGCMGGAGEAGLPLLFIMALIFLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEITGSDWCPPPLPSEHVQQLKTLGLL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1195 320 CDD RING_CH-C4HC3_MARCH 31 79 - -
Apr8g1195 320 ProSiteProfiles Zinc finger RING-CH-type profile. 23 85 IPR011016 GO:0008270
Apr8g1195 320 PANTHER BNAA04G12620D PROTEIN 1 320 - -
Apr8g1195 320 Pfam RING-variant domain 31 78 IPR011016 GO:0008270
Apr8g1195 320 SUPERFAMILY RING/U-box 26 83 - -
Apr8g1195 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 91 IPR013083 -
Apr8g1195 320 SMART ringv_2 30 79 IPR011016 GO:0008270
Apr8g1195 320 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1195 Apr-Chr8 16890596 16894481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1195 1 320 C3H Transcription Factor Family AT2G22120 82.407 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1195 - - gmx:100791777 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1195 8 16890596 16894481 Apr10g2178 10 34257224 34261618 PCT