Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1193 ATGGATTCTACATCTTCACAGTTTGTTTCCTCAAGAAGGATGGGTGTATACGATCCTATCCACCAAATTACCATGTGGGAAGAAAATTTCAAAAGTAACAGTAATTTAAGTGCATCCACATGCTTAATTGAGGAGGCGGGCATGAAGTTAGATAATCAGTCAGAGGATGCTTTTCATGAAATGTTGGGAACATCTACGAAGTATGACCAAGAAGCTAACAAACTTACTGAAAAGATACAAAGACGTCTAGCACAAAATCGAGAGGCTGCTCGTAAAAGTCGTTTGAGGAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTGGTGCAGTTAGAACAAGAGGTTGATCATGCAAGACAACAGGGATTGTATGTTGGTGACGGATTGGGTTCTAATAATTTGGATTTTGCTGGCTCTGTAAATTCAGAAATATCAAATTTTAAGACGGAGTATGGGCAATGGGTGGAGGAGCATAATAGACAAATCTTGGAATTGAGAAGTGCCTTAAGTGCTCATATTGGTGACTTACAGCTAGAGACACTTGTACATGGCATAATGAACCACTATTCCAAACTCTTCTGCATGAAATCAGCTGCTGCAAAAGCAGATGTTTTCTATGTAATGTCTGGTATGTGGAAGACCACAGCTGAACGATTTTTCTTATGGATCGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTTCCTTTGAGTGAACCCTTGACAGAGCAACAACGGTTTGATGCCTATGGCCTTGAAAAATCATGCCAGCAAGCAGAAGATGCCCTTTCACAAGGTATGGAAAAACTTCAGCAAATGCTTGCTGACTCTGTTGGTCTTCCACATATGGATATTGCAATGGAGAGGCTCGAAGCTCTGGTGAGCTTTGTGAACCAGGCAGATCATCTCCGAAAAGAAACTTTACGCCAAATGTGTCGAATACTTACCATTCGTCAAACTGCTCGTTTTCTTCTTACTTTGGCAGAATATTTTCAACGCCTCAGAGCATTGAGCAAACTTTGGGCTAATCGTCCTCGTGAACCTGCTTAG 1062 0.4162 MDSTSSQFVSSRRMGVYDPIHQITMWEENFKSNSNLSASTCLIEEAGMKLDNQSEDAFHEMLGTSTKYDQEANKLTEKIQRRLAQNREAARKSRLRKKAYVQQLESCRLKLVQLEQEVDHARQQGLYVGDGLGSNNLDFAGSVNSEISNFKTEYGQWVEEHNRQILELRSALSAHIGDLQLETLVHGIMNHYSKLFCMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLADSVGLPHMDIAMERLEALVSFVNQADHLRKETLRQMCRILTIRQTARFLLTLAEYFQRLRALSKLWANRPREPA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1193 353 SMART brlzneu 74 156 IPR004827 GO:0003700|GO:0006355
Apr8g1193 353 Coils Coil 97 124 - -
Apr8g1193 353 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 352 - -
Apr8g1193 353 Coils Coil 72 92 - -
Apr8g1193 353 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 106 IPR004827 GO:0003700|GO:0006355
Apr8g1193 353 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Apr8g1193 353 Pfam bZIP transcription factor 78 106 IPR004827 GO:0003700|GO:0006355
Apr8g1193 353 Coils Coil 260 280 - -
Apr8g1193 353 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Apr8g1193 353 ProSiteProfiles DOG1 domain profile. 147 348 IPR025422 GO:0006351|GO:0043565
Apr8g1193 353 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Apr8g1193 353 PANTHER TRANSCRIPTION FACTOR TGA9 1 352 - -
Apr8g1193 353 Gene3D - 76 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1193 Apr-Chr8 16868004 16877208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1193 1 353 Calmodulin-binding Proteins AT5G10030 63.187 1.53e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr8g1193 DOG1 3.9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1193 8 16868004 16877208 Apr10g2177 10 34242127 34248475 PCT