Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1186 ATGACAGGGAAGAGAAACCAAACCAGTCCTGTAGGAAGTCCCACATCTGGTAACATCTCAGACAGTTCTTCAAAAGAACAAGACAGGTTCCTCCCAATAGCCAACGTTAGCAGAATCATGAAAAGGGCACTTCCAGCCAATGCCAAAATCTCAAAAGAAGCTAAGGAAACAGTCCAAGAATGTGTGTCTGAGTTCATAAGCTTCATCACTGGTGAAGCCTCAGACAAGTGTCAGAGAGAAAAAAGGAAGACAATTAACGGTGATGATCTTCTTTGGGCCATGACAACACTTGGTTTTGAAAACTATGTTGGACCCTTGAAGGTTTATCTCAACAACTACAGAGAAACTGAGGGAGAAAAGAGTTCTATGGCTAAACAAGAAGATCATCACTCTCCAACAGATCAACCCAATGATGGGGTAGCTGAAATCAACAAGTTGGCTCATTCTGTCTCAACCAAAGGAGATTTCAACACTTTCAATGGTGGATTCTACTCTGTTGGGCCCCAAGTAACTACTTCAAAGAGTTTCACTGAGATTGGAGGAATCACTGGTTATAGAGAGAGTTCCATGAACAGGGTCATTGCTCAAAGTGCGGTCAATGGTGATCAAGATGCAAGTGGTAATAGAATGATGCCACCCCACCTACGTTATAGGGTTGAATGGTAG 666 0.4279 MTGKRNQTSPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNYRETEGEKSSMAKQEDHHSPTDQPNDGVAEINKLAHSVSTKGDFNTFNGGFYSVGPQVTTSKSFTEIGGITGYRESSMNRVIAQSAVNGDQDASGNRMMPPHLRYRVEW* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1186 221 MobiDBLite consensus disorder prediction 119 139 - -
Apr8g1186 221 Gene3D Histone, subunit A 17 150 IPR009072 GO:0046982
Apr8g1186 221 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Apr8g1186 221 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Apr8g1186 221 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Apr8g1186 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Apr8g1186 221 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Apr8g1186 221 MobiDBLite consensus disorder prediction 1 27 - -
Apr8g1186 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 194 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr8g1186 221 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr8g1186 221 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 7 194 - -
Apr8g1186 221 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1186 Apr-Chr8 16827197 16827944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1186 21 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.112 4.94e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr8g1186 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1186 K08065 - gmx:100810059 360.918