Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1178 ATGGCGGCGAAGCAGAGAACACGGAAGGTTAGCAGAAACCCTGAATTGATAAGGGGAATTGGAAAGTACTCGAGGTCGGCGATGTACCACAAGAGGGGTCTCTGGGCTATCAAGGCCAAAAACGGTGGCGTTTTTCCTCGCCATGACCCTAAACCTAAACCTGAAGCTACTCCTCAAAAGCCCCCTAAGTTTTACCCTGCCGATGATGTCAAGAAGCCTCTTCTAAACAAGCACAAACCAAAACCCACTATGCTCAGGGCTAGCATTACTCCTGGGACAGTGTTGATTCTTCTTGCTGGTCGATTCAAGGGAAAGAGGGTAGTATTTCTCAAGCAGCTTCCTTCTGGGTTGCTTCTTGTGACTGGTCCTTTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTTATTGGCACATCAACCAAAGTAGATGTCTCTGCTGTTAATGTGGATAACTTTGATGACAAGTACTTTACAAAGGAAGCCCAGAAAAAGAAAAAGAAGGGTGAAGGCGAGTTCTTTGAGGCAGAGAAGGGGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTAGACTCTGCGGTGATAAAAGCCATTGAAAGTGTTCCAGACTTGAAGGTTTATCTGGGTGCCAGGTTTTCCCTTAAGGCAGGTGTAAAGCCTCACGAGTTAGTCTTCTAG 702 0.4615 MAAKQRTRKVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKNGGVFPRHDPKPKPEATPQKPPKFYPADDVKKPLLNKHKPKPTMLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDVSAVNVDNFDDKYFTKEAQKKKKKGEGEFFEAEKGEKSVLPQQKKDDQKTVDSAVIKAIESVPDLKVYLGARFSLKAGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1178 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Apr8g1178 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Apr8g1178 233 CDD KOW_RPL6 81 233 IPR041997 -
Apr8g1178 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Apr8g1178 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Apr8g1178 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Apr8g1178 233 Gene3D - 87 171 IPR014722 -
Apr8g1178 233 MobiDBLite consensus disorder prediction 42 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1178 Apr-Chr8 16779822 16781606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1178 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.687 6.10e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1178 K02934 - gmx:100499766 401.749