Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1173 ATGGTAAATTTTTCCACTGAGAACATGGTTCCCTATCAACATCCAGTAGGTTTAAGGGTCCTTGCTGTTGACAATGACACCAATGTTCTTGAAAATTTTGAGCAAATGGGTATTATATACCATTATTCAGTTACCACATGCTCCAATTCTTCACTTGCCTTGAATATTGTGCGGGAAAGAAGAGGATATTTTGATATGATACTTATTGATGTTCATATGCCAAATATGGATGGCTTTGAATTCTTGAAGCGTGTTAGTCAAGAAACTGATGTTCCTATTATTATGATTTCTGTTGATGCTGCAACAAGTGATGTCATGAAGTCTATTAAATTTGGAGCTTCTGATTATTGGCTTAAACCTTTATCAAAGGAACAATTCAAGAATATGTGGCAGCATGTTGCTAGAAAAGCTTGGAGGGAAAATAAACTACAGATAACTTTTGGCAACTTGGAAGATGATGATCACAAGAAACGGGGGAATGATGATTCTGAATCTATTATTGATAGAACAAAAGGAGTAGTTGGAGACCAAAATAAGAGCAATTCAAAGGAAGACGCGGTTGATGAATTGGATAATTATTATCAATCACCGACAAAGAAGCCTCGAGTAATATGGTCAAGAGTTATGCACCTAAAATTTGTTGAGGCTGTGATGCAACTTGGGCTTGATAAGGCCATGCCAAAGAAAATTCTTGAAGTGATGAAAGTTCCTGGTTTAACAAGAGAGAATGTTGCCAGTCACTTACAGAAATTTAGACTTTCTTTAAAGAAAAATGATGAAGTGGCTCAGCTACAACCAAACGTTGATGGAAGATTGGGTAACTTTCAAGCTTTGGCTGCTGCTGGCCATGTTCCTTGTGAAATAATGGCTAACATAATGCCAACAGAGGACCAAAATTCCCTCCTGCAATCAACCATACAATGTCCTAACAATTCCCATGCAGAACAAGCTATAACATATGCTCATCCTCTAGCAAAATATCCTTTCAACATTGCCAACAATTTTCCTCTGTCCATCATACCTCTAGATGATGCTTCAACAAGATATGGAGCATGGCCTTCATCTAGTACAATTGATTCAGTGAGAGTCACTGATACACTGCAGCATCAACATCCATTAATGCATCAACTAATTCATTCAATCAATGTTCAACCCTCTTGCATGGTTGATTCTGGGAGCCTTGTTTCTATTATGCAACATTGCAACTTTTGTAGCAACAATTCTGTTATGGATTATGGTTTACTGTCACCTCAATAG 1257 0.3739 MVNFSTENMVPYQHPVGLRVLAVDNDTNVLENFEQMGIIYHYSVTTCSNSSLALNIVRERRGYFDMILIDVHMPNMDGFEFLKRVSQETDVPIIMISVDAATSDVMKSIKFGASDYWLKPLSKEQFKNMWQHVARKAWRENKLQITFGNLEDDDHKKRGNDDSESIIDRTKGVVGDQNKSNSKEDAVDELDNYYQSPTKKPRVIWSRVMHLKFVEAVMQLGLDKAMPKKILEVMKVPGLTRENVASHLQKFRLSLKKNDEVAQLQPNVDGRLGNFQALAAAGHVPCEIMANIMPTEDQNSLLQSTIQCPNNSHAEQAITYAHPLAKYPFNIANNFPLSIIPLDDASTRYGAWPSSSTIDSVRVTDTLQHQHPLMHQLIHSINVQPSCMVDSGSLVSIMQHCNFCSNNSVMDYGLLSPQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1173 418 SMART REC_2 18 130 IPR001789 GO:0000160
Apr8g1173 418 MobiDBLite consensus disorder prediction 151 186 - -
Apr8g1173 418 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Apr8g1173 418 MobiDBLite consensus disorder prediction 151 169 - -
Apr8g1173 418 CDD REC_typeB_ARR-like 20 134 - -
Apr8g1173 418 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 9 388 - -
Apr8g1173 418 SUPERFAMILY CheY-like 17 151 IPR011006 -
Apr8g1173 418 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Apr8g1173 418 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 388 IPR045279 GO:0009736
Apr8g1173 418 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Apr8g1173 418 Gene3D - 197 258 - -
Apr8g1173 418 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Apr8g1173 418 Gene3D - 13 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1173 Apr-Chr8 16753681 16755647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1173 13 265 Response Regulator Gene Family AT2G25180 43.701 2.45e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr8g1173 Response_reg 7.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1173 - K14491 aprc:113871558 848.58