Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1164 ATGTCAACAACTTCTCAAACTATTGTTCACCATAGCTTATTCGAGGAACAAGATCAGAACATGACTACACAGATGGGTTTCTTTCCCTTTCCAACAAACATTTCCTTCCCTCCTTTGGGCTGCCATCAATCTTCTTTGAAAACCTTCAGTTCCATAGCTCCTTCTTCACTTGCAATATCTCAAACTGATTCTGCATCCAATCTATCAGAAACCCTATTCTCAACTACTCCTCAAAAGTCAAGAGCAGACCTCACTTCTAGCTTTGGAGGAGCTCAATTTCTTTCCTTGCATAGATCGAGTATAAATCCATGGGCATTGGGAGAAGTGGCTGATTGCTTTAGCGGTAAAAGAAGTGGGGTAGATGATCATCATCTAGGAATTTCAGCCATGAAGATGAAGAAAATCAAGGGAAGAAGGAAGGTGAGAGAGCCTAGGTTTTGTTTCAAGACTATGAGCGATGTGGATGTGTTGGACGATGGCTACAAGTGGAGGAAGTATGGACAGAAAGTGGTGAAGAACACGCAGCACCCCAGCTACTACCGTTGCACACAAGATAATTGTCGTGTAAAGAAACGCGTGGAACGCTTAGCTGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTTGAAGACTCTCAATCTCCATCTCAACTCGGTAATTTCTTATGGTAG 702 0.4274 MSTTSQTIVHHSLFEEQDQNMTTQMGFFPFPTNISFPPLGCHQSSLKTFSSIAPSSLAISQTDSASNLSETLFSTTPQKSRADLTSSFGGAQFLSLHRSSINPWALGEVADCFSGKRSGVDDHHLGISAMKMKKIKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSQSPSQLGNFLW* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1164 233 Gene3D WRKY domain 144 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr8g1164 233 ProSiteProfiles WRKY domain profile. 152 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr8g1164 233 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 42 224 - -
Apr8g1164 233 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr8g1164 233 Pfam WRKY DNA -binding domain 158 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr8g1164 233 SMART WRKY_cls 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr8g1164 233 MobiDBLite consensus disorder prediction 218 233 - -
Apr8g1164 233 MobiDBLite consensus disorder prediction 209 233 - -
Apr8g1164 233 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 42 224 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1164 Apr-Chr8 16661881 16663939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1164 43 233 WRKY Transcription Factor Family AT4G39410 48.780 3.94e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr8g1164 WRKY 2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1164 - - pvu:PHAVU_002G266400g 417.157