Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1150 ATGTGTATGTCAAAGGTGGCGAATCATAGAGAAAAGGAAAACGAGGTTGACTTTGATGAAGAGAACTATCACACGTTGTCAATGCCAATGATGTTTCAAGGTCTGAATAGAGAGATGGAGATGTCAGCCATGATCTCGGCTTTGACCCATGTTGTACGTGGAGAGGAACATGGCACGGTTCTTCATCAGAATATGGACCATAGTTCAATTGGTGAAGGTGGTGGTGGTGGTGCTTCTGTGACACCAAACTTGCCTTCTGTTTCAACTACACAATCTTCTCCTCCTTCATCTAATGGTGGCAGCTCTGCTCTCAAGAGAAGAAGAGCAAGTGATGCATCCCCTTCTATTCCCACAAGAGCAGAAAGTTCAAGCAACAAGACCAGCACAATAACAGCAAAAACAACAACAGAAACAAGCCAAATGGAAAATACAATGTATGAATACAGAACAGAGAACATGAGAGAGGAAGTGCAACCAAGTAGAAAATACAGAGGAGTGCGACAGAGGCCATGGGGGAAGTGGGCTGCAGAGATAAGAGACCCGTTCAAAGCAACAAGAGTGTGGTTAGGAACATTTGATACAGCTGAAGCAGCAGCTAGAGCATATGATCAAGCTTCATTGCGTTTCAGAGGCAACAAAGCAAAACTTAACTTCCCTGAAAATGTTAGGCTAAGACAACCTCAACTCAATCCACAACCAACCCATTTCACCATTTCCAATTCTAGGAGTACCCTTTTGTCCATTCCATCTAACACTGATCCAATAGTTCACACTGAACCTCTTCACACTTCTCAGGGTTCACGTGGCTCAAACAACTTTTATGAATATTCTATGCATGTTCCCATGAGCCTATATGATCAGATAACTATGCCATCTACTGTGGCTTCCCATCTTCAATCTTCATCGTCTTCATCAGCTTCATATTCTTCTTCTTCAACCATGACTTCTCCGCAGGCACCTTCTGTTTATCCTACACAGTTACCTGCATGGTCTTCTTCTGGTTATAGCTCTTCTCCCTCTGGATGA 1026 0.4327 MCMSKVANHREKENEVDFDEENYHTLSMPMMFQGLNREMEMSAMISALTHVVRGEEHGTVLHQNMDHSSIGEGGGGGASVTPNLPSVSTTQSSPPSSNGGSSALKRRRASDASPSIPTRAESSSNKTSTITAKTTTETSQMENTMYEYRTENMREEVQPSRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFDTAEAAARAYDQASLRFRGNKAKLNFPENVRLRQPQLNPQPTHFTISNSRSTLLSIPSNTDPIVHTEPLHTSQGSRGSNNFYEYSMHVPMSLYDQITMPSTVASHLQSSSSSSASYSSSSTMTSPQAPSVYPTQLPAWSSSGYSSSPSG* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1150 341 Gene3D AP2/ERF domain 161 221 IPR036955 GO:0003700|GO:0006355
Apr8g1150 341 MobiDBLite consensus disorder prediction 299 341 - -
Apr8g1150 341 MobiDBLite consensus disorder prediction 65 143 - -
Apr8g1150 341 MobiDBLite consensus disorder prediction 115 143 - -
Apr8g1150 341 SMART rav1_2 162 225 IPR001471 GO:0003700|GO:0006355
Apr8g1150 341 PANTHER DNA-BINDING DOMAIN PROTEIN 7 336 - -
Apr8g1150 341 PRINTS Ethylene responsive element binding protein signature 163 174 IPR001471 GO:0003700|GO:0006355
Apr8g1150 341 PRINTS Ethylene responsive element binding protein signature 185 201 IPR001471 GO:0003700|GO:0006355
Apr8g1150 341 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Apr8g1150 341 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Apr8g1150 341 MobiDBLite consensus disorder prediction 81 104 - -
Apr8g1150 341 Pfam AP2 domain 162 211 IPR001471 GO:0003700|GO:0006355
Apr8g1150 341 PANTHER DNA-BINDING DOMAIN 7 336 IPR044808 GO:0003700|GO:0009873
Apr8g1150 341 ProSiteProfiles AP2/ERF domain profile. 162 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1150 Apr-Chr8 16543315 16545126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1150 1 291 AP2-EREBP Transcription Factor Family AT5G64750 37.079 3.40e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g1150 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1150 - - var:108344045 296.589