Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1148 ATGGACTTCGACGAGTATGAATACCTGGAGAAGACAGTGGAAGAGCAACAGGAAGACAGAGATTCCTCTAAGAAGAAGAAGGATAACAACGACAAGAGCGAGAGGAGTTACCGGAAGCACGACGTTGACGAGGATCTCGACGCCGACGAAAGGAGGAGCAAGAGGTCCAAGGGCGACGACGAGAACGGTTCCAAGAGAGATCGTGACAGAGATAGAGAACGCGAGCGCGACCGTTCCTCTGCCCGTCACCGAAGTGAGAGGGAGAGAGACGGTGAGAGGAGTAGCAGAGACAAAGAGAGGGATAAGGATAGAGAGAGGAGGGACAAAGACAGGGATAGGAGAGACAGGGAAAAGGAACGCGAGAGAAGGGACAGGGAGCGAGAGAGAGAGCGAGACGAGAAAGAGAGATCCAGAAGGAGTAGGAGTCGTTCTGAGAGAGATAGAGACAGAGAACGAGATTTCGAGACGCGGGATGGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAGGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAGGGAGTTGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCTATTGCTCTATCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCAGCCGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAGTTGTATGTAGGGAATCTTCACTTTAATATGACTGAAAGTCAGCTGCGTGAGATATTTGAGCCATTTGGTCCAGTTGAGGTTGTTCAGCTGCCTCTTGACTTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCGTGTGTAACAGATCATGTTGCAAGCCAAGATACAACTGCAAAATCTGCAGATTTGGATGATGATGAGGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTAGCTGGTGCTGACATTCCTGCAAGTATAGGTATGCCCATTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTATTAGCTTGCCTATTGGTAATTCAGGTATTATACCTGCACCAGTTCTACCAGCACAAGTTATGCCTACCCCGGTGGTAGAACCAGTTGGAAGCCCCAGCGAGTGTTTGTTGTTAAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATATGGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAGTATGGCCGGGTGAAGCATATTTTTGTTGACAAACATAGTGCAGGATTTGTGTATTTGCGGTTTGAAACTGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCATATGAGATGGTTTGCACGCAGGTCAATTTCAGCTGTCTTCATGATTTTTGAACAGGAAACATTGACATTATCAAAATCCTATTGTGTCTTCAACCGCAGTCATATGAAGCCAAGTTTAAAGGGGAAGCTTGAAGTTCATACAGGCCTCCGGGGTTCTAAATATACAATCTGCATAATTTTGTGGTCTTAG 1746 0.4674 MDFDEYEYLEKTVEEQQEDRDSSKKKKDNNDKSERSYRKHDVDEDLDADERRSKRSKGDDENGSKRDRDRDRERERDRSSARHRSERERDGERSSRDKERDKDRERRDKDRDRRDREKERERRDRERERERDEKERSRRSRSRSERDRDRERDFETRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVASQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADIPASIGMPIVNGSVPAQQAISLPIGNSGIIPAPVLPAQVMPTPVVEPVGSPSECLLLKNMFDPSTETEPDFDMDIKEDVEEECSKYGRVKHIFVDKHSAGFVYLRFETVEAASAAQRAMHMRWFARRSISAVFMIFEQETLTLSKSYCVFNRSHMKPSLKGKLEVHTGLRGSKYTICIILWS* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1148 581 CDD RRM3_RBM39_like 451 533 - -
Apr8g1148 581 SUPERFAMILY RNA-binding domain, RBD 281 359 IPR035979 GO:0003676
Apr8g1148 581 Coils Coil 109 136 - -
Apr8g1148 581 Gene3D - 111 267 IPR012677 -
Apr8g1148 581 CDD RRM1_RBM39_like 181 253 - -
Apr8g1148 581 SMART rrm1_1 181 253 IPR000504 GO:0003723
Apr8g1148 581 SMART rrm1_1 453 531 IPR000504 GO:0003723
Apr8g1148 581 SMART rrm1_1 283 356 IPR000504 GO:0003723
Apr8g1148 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 257 IPR000504 GO:0003723
Apr8g1148 581 MobiDBLite consensus disorder prediction 13 156 - -
Apr8g1148 581 Gene3D - 278 374 IPR012677 -
Apr8g1148 581 MobiDBLite consensus disorder prediction 1 156 - -
Apr8g1148 581 PANTHER CC1-LIKE SPLICING FACTOR 1 534 - -
Apr8g1148 581 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Apr8g1148 581 CDD RRM2_RBM23_RBM39 284 356 - -
Apr8g1148 581 TIGRFAM SF-CC1: splicing factor, CC1-like family 67 534 IPR006509 GO:0003723|GO:0005634|GO:0006397
Apr8g1148 581 SUPERFAMILY RNA-binding domain, RBD 173 267 IPR035979 GO:0003676
Apr8g1148 581 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 534 - -
Apr8g1148 581 Coils Coil 6 26 - -
Apr8g1148 581 Gene3D - 448 545 IPR012677 -
Apr8g1148 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 528 IPR000504 GO:0003723
Apr8g1148 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 249 IPR000504 GO:0003723
Apr8g1148 581 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 354 IPR000504 GO:0003723
Apr8g1148 581 SUPERFAMILY RNA-binding domain, RBD 448 532 IPR035979 GO:0003676
Apr8g1148 581 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 375 470 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1148 Apr-Chr8 16523890 16530790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1148 267 355 Eukaryotic Initiation Factors Gene Family AT4G34110 40.000 1.67e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1148 K13091 - gmx:100793461 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1148 8 16523890 16530790 Apr1g0494 1 6043381 6050480 PCT