Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1134 ATGGAGGCCCTTGGGTCTGTCGATGACTTCTTGGATTTTTCATCGGACATAGGTGAGCATGATGATGATGATGACAAACCTAGTAAATCCTTTCCTTCACTTAACCCAAAATGCAGTGATCCACCATCATGTAATCCATTGGACCTGGATGATCCAAACCATTCGTTTTCTGAGTTTGCAGAGGAGGAGCTAGAATGGCTATCAAACAAAGATGCATTTCCTGCTGTTGAAACATTTGTTGACTTACAGTCTATTCAACCTGACATGACCAAGCACCAAAGGACAGCCCCAGTGCTCGAGTACAGCACAAGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTATGATCACCTAAAGGTTCCTGTCCGTGCACGGAGCAAGGGTCGCAGTAGGCGTCACCCTGGCATTGCTAACAACTCTAGCCAGGAATTCTGGGGTAGACAACCGAGTAATGAAACTTCCAAAGCAGAACAAGTGATAAAAATTGGGAGGAAATGTCAGCACTGTGGAGCTGAAAATACTCCACAATGGCGGGCAGGCCCACTTGGGCCCAAAACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGGAGGCTTGTGCCTGAATATCGTCCTGCAAGCAGCCCAACTTTTCGTAGTGATCAACATTCCAATTCCCATAGGAAGATAATGGAGATGAGAAGGCAGAAGCAAATGGGAATGGGATAA 729 0.4568 MEALGSVDDFLDFSSDIGEHDDDDDKPSKSFPSLNPKCSDPPSCNPLDLDDPNHSFSEFAEEELEWLSNKDAFPAVETFVDLQSIQPDMTKHQRTAPVLEYSTSSSNSNNSTNSISLLNSYDHLKVPVRARSKGRSRRHPGIANNSSQEFWGRQPSNETSKAEQVIKIGRKCQHCGAENTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFRSDQHSNSHRKIMEMRRQKQMGMG* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1134 242 CDD ZnF_GATA 171 219 IPR000679 GO:0006355|GO:0043565
Apr8g1134 242 MobiDBLite consensus disorder prediction 210 229 - -
Apr8g1134 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 229 - -
Apr8g1134 242 ProSiteProfiles GATA-type zinc finger domain profile. 166 202 IPR000679 GO:0006355|GO:0043565
Apr8g1134 242 Gene3D - 166 219 IPR013088 GO:0006355|GO:0008270
Apr8g1134 242 MobiDBLite consensus disorder prediction 130 158 - -
Apr8g1134 242 MobiDBLite consensus disorder prediction 139 158 - -
Apr8g1134 242 PANTHER GATA TRANSCRIPTION FACTOR 1 7 238 - -
Apr8g1134 242 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
Apr8g1134 242 PANTHER GATA TRANSCRIPTION FACTOR 7 238 - -
Apr8g1134 242 MobiDBLite consensus disorder prediction 1 54 - -
Apr8g1134 242 SMART GATA_3 166 216 IPR000679 GO:0006355|GO:0043565
Apr8g1134 242 Pfam GATA zinc finger 172 205 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1134 Apr-Chr8 15894046 15900028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1134 52 242 C2C2-Gata Transcription Factor Family AT3G24050 45.133 3.74e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr8g1134 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1134 - - gmx:100784527 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1134 8 15894046 15900028 Apr8g1134 8 15894046 15900028 ECH