Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1098 ATGTATTGGGGGGGAGTTATGTCAGGCCATATGGGTCGGGGTGTCATAGAGGAAGAGGTGTGGAGGAAGGGACCTTGGACTGCTGAAGAGGACAGGTTGCTAAATGAGTATGTAAGGCTGCATGGTGAAGGTAGATGGAACTCAGTTGCCAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAAATAACACCCCAAGAAGAGAGCATAATTCTAGAGCTGCATGCAAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGGAGAACTGACAATGAGATAAAAAATTATTGGAGGACCCATTTCAAGAAAAAGGCCAAAAGTCCCTCTGATGCAGCAGAGAAGGCTAAAAATAGACTCTTGAGGAAGCAGCAATTTCATCAACAGCAAAAACAACAACAGTTGCTGCAGCAGCAGGAGGCACAACAGCAACAATTGCAATTCAACTTTGACATGAAGGGGATCATGGCCTTGCTTGAGGATAACAGCCATAGAGCACCTCACACATCTCAAGCTAGACAAGAAATGGTTAACATGCAACAAAACACCACAGAAGAGCAGGGATACTTGTACTCTATGCTCAATGGTAACACTTCTGCAACAGAGACCTTAGCAGAAGAAATTTTGTGGGATGGCCTGTGGAACTTAGATGATGTTCATGGGAATTTCAGTGTAGCTAGTGCTGCAAGCAAAGCTGGCCTTTACAATTTAGTTGCTCCCTTCTGTTAA 786 0.4517 MYWGGVMSGHMGRGVIEEEVWRKGPWTAEEDRLLNEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKAKNRLLRKQQFHQQQKQQQLLQQQEAQQQQLQFNFDMKGIMALLEDNSHRAPHTSQARQEMVNMQQNTTEEQGYLYSMLNGNTSATETLAEEILWDGLWNLDDVHGNFSVASAASKAGLYNLVAPFC* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1098 261 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Apr8g1098 261 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Apr8g1098 261 CDD SANT 80 121 IPR001005 -
Apr8g1098 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Apr8g1098 261 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Apr8g1098 261 Gene3D - 80 124 - -
Apr8g1098 261 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Apr8g1098 261 SMART sant 22 72 IPR001005 -
Apr8g1098 261 SMART sant 75 123 IPR001005 -
Apr8g1098 261 Gene3D - 23 75 - -
Apr8g1098 261 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Apr8g1098 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Apr8g1098 261 CDD SANT 25 70 IPR001005 -
Apr8g1098 261 PANTHER MYB TRANSCRIPTION FACTOR 4 254 - -
Apr8g1098 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 254 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1098 Apr-Chr8 15007721 15008942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1098 18 261 MYB Transcription Factor Family AT4G13480 56.767 8.17e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g1098 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1098 K09422 - gmx:100795981 447.203