Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1094 ATGGGTGGAGAGGGGATGAAGGAAGTGGGAATGGTGGCGAAGAAGCTTATACGAAGCACAGGGAAAGCAGCGTGGATCGTTGGAACAACTTTCATCGTTTTGGTGGTTCCTCTCATCGTTGCGATGGACCGCGAACAACAGATCAACGAACTCGAGTCCCAACAGGCCAGCATCCTCGGAACCCCTCCTTCCCTTTCTTGCATCACTGGACAGTGGACACAATCATGCCACTTGCATCACCACAACATGGCTGCCACAGCTGCTGCAGGCATAGCATCCTTGTTTTCTTCTTCCATTAACACAGTCAAATGTGTGCCCTCAAACCGCATGTTTGCATCTTTGACACTCTCCTATGTAGTGGAACCTTTGTCCATTGGGGGTACCATTTCACACAAGTTGTGGGTGCCTAGAATTTCAGCACAAGAAGAGATGGTTGTGGCTTCTGAAGTTGATGCTGCTTTAGTTGAAGAGAAAGTGGAGGAAGGAGAAGTGATAGCAGAACAAGACACTGAATCCTCTGACAACACTAAACTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAAAACTTGCAGGGTTAATTGAGGACTATGGTAGCGCAGAACTAATTGAGGTTCTTTACAACAGGGAAACTGGAAGAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCTTGGGAAGAACCTTGCGGGTGAACTTCTCTAACAGACCAAAACCAAAAGAACCTTTGTACCCTGAAACTGAGCATAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTGACTTCTGAGAGTTTGACACAAGCTTTTCAAGAATATGGAACAGTGGTTGGAGCAAGGGTCTTGTATGATGGGGAATCTGGTAAGTCACGTGGCTATGGCTTTGTTTGCTACTCAACAAAAGCAGAGATGGAATCTGCCCTTGCAGCCTTGAATGATGTGGACCTTGAAGGACGGGCTATGCGGGTATGCTTGGCTCAAGGAAAACGTTCACAAGGTTAA 1053 0.453 MGGEGMKEVGMVAKKLIRSTGKAAWIVGTTFIVLVVPLIVAMDREQQINELESQQASILGTPPSLSCITGQWTQSCHLHHHNMAATAAAGIASLFSSSINTVKCVPSNRMFASLTLSYVVEPLSIGGTISHKLWVPRISAQEEMVVASEVDAALVEEKVEEGEVIAEQDTESSDNTKLYFGNLPYSVDSAKLAGLIEDYGSAELIEVLYNRETGRSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSNRPKPKEPLYPETEHKLFVGNLSWSVTSESLTQAFQEYGTVVGARVLYDGESGKSRGYGFVCYSTKAEMESALAALNDVDLEGRAMRVCLAQGKRSQG* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1094 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 254 IPR000504 GO:0003723
Apr8g1094 350 PANTHER TRANSFORMER-2-RELATED 153 348 - -
Apr8g1094 350 SUPERFAMILY RNA-binding domain, RBD 169 259 IPR035979 GO:0003676
Apr8g1094 350 Pfam Mitochondrial import receptor subunit Tom22 9 56 IPR005683 GO:0005741|GO:0006886
Apr8g1094 350 Gene3D - 257 350 IPR012677 -
Apr8g1094 350 SUPERFAMILY RNA-binding domain, RBD 260 347 IPR035979 GO:0003676
Apr8g1094 350 Gene3D - 139 256 IPR012677 -
Apr8g1094 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 345 IPR000504 GO:0003723
Apr8g1094 350 SMART rrm1_1 177 250 IPR000504 GO:0003723
Apr8g1094 350 SMART rrm1_1 268 341 IPR000504 GO:0003723
Apr8g1094 350 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 153 348 - -
Apr8g1094 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 248 IPR000504 GO:0003723
Apr8g1094 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 338 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1094 Apr-Chr8 14877106 14898534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1094 154 346 Eukaryotic Initiation Factors Gene Family AT4G34110 28.774 3.43e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1094 - - aprc:113871254 679.478