Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1090 ATGAATTGCTCCATCTCCGGCGAAGTTCCGGAAGAGCCCGTGGTGTCGAAGAACTCCGGTCTTCTCTTTGAGAAGCGTTTGATTGAGAGACACATTTCGGATTATGGGAAGTGTCCAATTACTGGAGAACCACTTACTATGGACGACATTGTACCAGTCAAGACAGGGAAGATAGTGAAGCCCAGACCCATTCAGGCAGCTAGCATCCCTGGCATGATTGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCGTTGGAGCAACAACTGCACACAGCAAGGCAAGAGCTTAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGAGTGATTGCAAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTCCTTTCACAAGCAGAAAGGAAGTTCACTGTTTCTGCTCCAAATGCTGTGGCAGCAAATGCCCCTGTTCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGATCTTGCACCTGGTGCAAAGAAAATGCATCCTGGAATGTCTTCTAGCATAATTTCTGAGCTTAGTGACTGCAATGCTGCTCTTTCCCAGCAGAGGAAAAAGAGACAGATTCCTGCTACTTTGGCTCCTGTTGAAGCTGTAGAGGCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAACAAACAGGGCATTATATCTCTTGATATCCTTTATTCTAAGGACCTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTATCTACACTCAGTGGTCACTCTAAAAAGGTTACAAGTGTAAAGTTTGTAGCTCAGGGTGAATCATTCTTAACTGGTTCGGCAGATAAGACAGTTCGTTTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAAGCACATCTTAAAGGATCATACAGCTGAGGTACAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCTTCACTTGACGGCACTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTCTGACTCAGGTTTTCGACTCATCAGGTTCTTCTGAAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTCATTCTTGGAACTGGCACCACAGACTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGTATACAATTTCACTTTTTCTTATTTGAAGTTAAATATTAATATTTTTTTAATTCTGTGTTTTACTTTCTTCCATTGGTTGAAGGCAAATGTTGCTAGGTTTGATGGACATGTTGGGCCAGTAACTTCCATTTCTTTTTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCACGATGGTGTAAAGCTTTGGGATCTTCGTAAATTGAAAAATTTTAGGAATTTTACCCCTTATGATTCAGAAACTCCACCAAACTCTGTGGAGTTCGACCACAGTGGGTCCTACCTTGCAATTGCAGGCTCTGATATAAGGATTTACCAAGTTGCAAATGTGAAGTCTGAATGGAACTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGTAAAGCCACGTGTGTAAAATTTGGTCCAGATTCTCAGTACATAGCGGTGGGATCAATGGACCGGAATCTTCGAATATTTGGCTTGCCTAGTGAAGATGCTGCTGCTGAGTCATAG 1662 0.4236 MNCSISGEVPEEPVVSKNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPVKTGKIVKPRPIQAASIPGMIGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSFLSQAERKFTVSAPNAVAANAPVLSNGKRAAEDEDLAPGAKKMHPGMSSSIISELSDCNAALSQQRKKRQIPATLAPVEAVEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVAQGESFLTGSADKTVRLWQGSDDGNYNCKHILKDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVFDSSGSSEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQVYNFTFSYLKLNINIFLILCFTFFHWLKANVARFDGHVGPVTSISFSENGYFLATAAHDGVKLWDLRKLKNFRNFTPYDSETPPNSVEFDHSGSYLAIAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDSQYIAVGSMDRNLRIFGLPSEDAAAES* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1090 553 CDD WD40 226 542 - -
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 387 IPR001680 GO:0005515
Apr8g1090 553 Gene3D - 201 544 IPR015943 GO:0005515
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Apr8g1090 553 SMART WD40_4 415 453 IPR001680 GO:0005515
Apr8g1090 553 SMART WD40_4 456 495 IPR001680 GO:0005515
Apr8g1090 553 SMART WD40_4 212 252 IPR001680 GO:0005515
Apr8g1090 553 SMART WD40_4 300 339 IPR001680 GO:0005515
Apr8g1090 553 SMART WD40_4 343 384 IPR001680 GO:0005515
Apr8g1090 553 SMART WD40_4 255 294 IPR001680 GO:0005515
Apr8g1090 553 SMART WD40_4 502 543 IPR001680 GO:0005515
Apr8g1090 553 Pfam Prp19/Pso4-like 66 130 IPR013915 -
Apr8g1090 553 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Apr8g1090 553 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 553 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Apr8g1090 553 Coils Coil 115 135 - -
Apr8g1090 553 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Apr8g1090 553 SUPERFAMILY WD40 repeat-like 221 542 IPR036322 GO:0005515
Apr8g1090 553 SUPERFAMILY RING/U-box 1 53 - -
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 462 IPR001680 GO:0005515
Apr8g1090 553 Pfam WD domain, G-beta repeat 503 542 IPR001680 GO:0005515
Apr8g1090 553 Pfam WD domain, G-beta repeat 302 337 IPR001680 GO:0005515
Apr8g1090 553 Pfam WD domain, G-beta repeat 360 384 IPR001680 GO:0005515
Apr8g1090 553 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Apr8g1090 553 Pfam WD domain, G-beta repeat 419 453 IPR001680 GO:0005515
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 422 455 - -
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 387 - -
Apr8g1090 553 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Apr8g1090 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Apr8g1090 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Apr8g1090 553 CDD RING-Ubox_PRP19 3 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1090 Apr-Chr8 14749503 14761261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1090 1 553 U-box Gene Family AT1G04510 69.982 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1090 K10599 - gmx:100527039 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1090 8 14749503 14761261 Apr8g1090 8 14749503 14761261 ECH